Literature DB >> 21201110

2-Amino-5-cyano-pyridinium nitrate.

Jing Dai1.   

Abstract

In the title compound, C(6)H(6)N(3) (+)·NO(3) (-), the packing is consolidatedby N-H⋯N and N-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21201110      PMCID: PMC2959316          DOI: 10.1107/S1600536808028031

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemisty of amine derivatives, see: Manzur et al. (2007 ▶); Ismayilov et al. (2007 ▶); Austria et al. (2007 ▶); Wen (2008 ▶).

Experimental

Crystal data

C6H6N3 +·NO3 M = 182.15 Monoclinic, a = 4.6475 (9) Å b = 12.713 (3) Å c = 13.417 (3) Å β = 97.91 (3)° V = 785.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 298 (2) K 0.25 × 0.15 × 0.15 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.975, T max = 0.981 8053 measured reflections 1798 independent reflections 1163 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.127 S = 1.07 1798 reflections 142 parameters All H-atom parameters refined Δρmax = 0.17 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808028031/wk2092sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808028031/wk2092Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6N3+·NO3F(000) = 376
Mr = 182.15Dx = 1.541 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1796 reflections
a = 4.6475 (9) Åθ = 3.1–27.5°
b = 12.713 (3) ŵ = 0.13 mm1
c = 13.417 (3) ÅT = 298 K
β = 97.91 (3)°Block, colourless
V = 785.1 (3) Å30.25 × 0.15 × 0.15 mm
Z = 4
Rigaku Mercury2 diffractometer1798 independent reflections
Radiation source: fine-focus sealed tube1163 reflections with I > 2σ(I)
graphiteRint = 0.050
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −6→6
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −16→16
Tmin = 0.975, Tmax = 0.981l = −17→17
8053 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: difference Fourier map
wR(F2) = 0.127All H-atom parameters refined
S = 1.07w = 1/[σ2(Fo2) + (0.0514P)2 + 0.1542P] where P = (Fo2 + 2Fc2)/3
1798 reflections(Δ/σ)max < 0.001
142 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.7591 (5)0.86151 (17)0.31844 (17)0.0428 (5)
N40.0550 (4)0.94943 (14)0.12683 (14)0.0456 (5)
N20.4566 (4)0.71680 (19)0.25422 (16)0.0509 (5)
O1−0.1866 (3)0.98288 (12)0.08728 (13)0.0604 (5)
O20.2162 (4)1.00628 (14)0.18518 (14)0.0651 (5)
O30.1266 (4)0.85819 (13)0.10891 (13)0.0610 (5)
N10.8152 (4)0.69031 (15)0.38842 (14)0.0406 (4)
C30.9809 (5)0.89511 (17)0.38692 (17)0.0435 (5)
C51.0356 (4)0.72284 (18)0.45750 (17)0.0402 (5)
C61.3541 (5)0.86115 (17)0.53382 (18)0.0476 (6)
C10.6718 (4)0.75525 (16)0.31857 (15)0.0379 (5)
C41.1235 (4)0.82498 (16)0.45893 (16)0.0388 (5)
N31.5342 (5)0.89264 (16)0.59161 (18)0.0684 (7)
H51.126 (4)0.6708 (16)0.5011 (15)0.036 (5)*
H2A0.655 (4)0.9049 (16)0.2716 (15)0.033 (5)*
H31.041 (4)0.9695 (19)0.3867 (16)0.051 (6)*
H2B0.401 (5)0.650 (2)0.2641 (17)0.048 (7)*
H10.764 (5)0.620 (2)0.389 (2)0.067 (8)*
H2C0.370 (6)0.761 (3)0.216 (2)0.082 (10)*
U11U22U33U12U13U23
C20.0473 (13)0.0351 (11)0.0432 (12)0.0020 (9)−0.0043 (11)0.0098 (10)
N40.0556 (12)0.0365 (10)0.0425 (10)0.0046 (9)−0.0013 (9)0.0013 (9)
N20.0512 (12)0.0424 (12)0.0529 (12)−0.0048 (10)−0.0146 (10)0.0011 (10)
O10.0532 (10)0.0445 (9)0.0766 (12)0.0102 (8)−0.0156 (9)−0.0064 (8)
O20.0615 (11)0.0566 (11)0.0698 (11)0.0031 (8)−0.0179 (9)−0.0180 (9)
O30.0770 (12)0.0405 (9)0.0599 (11)0.0171 (8)−0.0098 (9)−0.0044 (8)
N10.0405 (10)0.0306 (10)0.0478 (11)−0.0032 (8)−0.0041 (8)0.0032 (8)
C30.0471 (13)0.0323 (12)0.0492 (13)−0.0021 (10)−0.0003 (11)0.0029 (10)
C50.0394 (11)0.0383 (12)0.0408 (12)0.0034 (9)−0.0025 (10)0.0052 (10)
C60.0495 (14)0.0373 (12)0.0515 (14)−0.0002 (10)−0.0089 (12)0.0008 (10)
C10.0356 (11)0.0399 (12)0.0370 (11)0.0027 (9)0.0007 (9)0.0003 (9)
C40.0355 (11)0.0377 (12)0.0414 (11)−0.0002 (9)−0.0014 (9)0.0020 (10)
N30.0697 (14)0.0501 (13)0.0755 (16)−0.0045 (11)−0.0249 (13)−0.0036 (11)
C2—C31.352 (3)N1—C51.348 (3)
C2—C11.411 (3)N1—C11.354 (3)
C2—H2A0.92 (2)N1—H10.92 (3)
N4—O31.239 (2)C3—C41.411 (3)
N4—O21.239 (2)C3—H30.99 (2)
N4—O11.249 (2)C5—C41.361 (3)
N2—C11.322 (3)C5—H50.94 (2)
N2—H2B0.90 (2)C6—N31.133 (3)
N2—H2C0.83 (3)C6—C41.440 (3)
C3—C2—C1119.6 (2)C2—C3—H3119.4 (13)
C3—C2—H2A123.7 (12)C4—C3—H3120.0 (13)
C1—C2—H2A116.7 (12)N1—C5—C4120.1 (2)
O3—N4—O2120.89 (19)N1—C5—H5116.3 (12)
O3—N4—O1119.08 (18)C4—C5—H5123.6 (12)
O2—N4—O1120.00 (18)N3—C6—C4177.9 (2)
C1—N2—H2B117.2 (15)N2—C1—N1118.9 (2)
C1—N2—H2C115 (2)N2—C1—C2123.1 (2)
H2B—N2—H2C127 (3)N1—C1—C2118.07 (19)
C5—N1—C1123.0 (2)C5—C4—C3118.77 (19)
C5—N1—H1117.7 (16)C5—C4—C6120.53 (19)
C1—N1—H1119.4 (17)C3—C4—C6120.69 (19)
C2—C3—C4120.5 (2)
C1—C2—C3—C4−0.6 (3)C3—C2—C1—N10.2 (3)
C1—N1—C5—C4−0.2 (3)N1—C5—C4—C3−0.3 (3)
C5—N1—C1—N2−179.4 (2)N1—C5—C4—C6178.5 (2)
C5—N1—C1—C20.2 (3)C2—C3—C4—C50.6 (3)
C3—C2—C1—N2179.8 (2)C2—C3—C4—C6−178.2 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2B···O2i0.90 (2)2.05 (3)2.941 (3)169 (2)
N1—H1···O1i0.92 (3)1.82 (3)2.733 (2)170 (2)
N1—H1···N4i0.92 (3)2.62 (3)3.505 (3)161 (2)
N2—H2C···O30.83 (3)2.10 (3)2.926 (3)174 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯O2i0.90 (2)2.05 (3)2.941 (3)169 (2)
N1—H1⋯O1i0.92 (3)1.82 (3)2.733 (2)170 (2)
N2—H2C⋯O30.83 (3)2.10 (3)2.926 (3)174 (3)

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Amino-5-cyano-pyridinium chloride.

Authors:  Xiao-Chun Wen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12

3.  Amine-controlled assembly of metal-sulfite architecture from 1D chains to 3D framework.

Authors:  Cristina Austria; Jian Zhang; Henry Valle; Qichun Zhang; Emily Chew; Dan-Tam Nguyen; J Y Gu; Pingyun Feng; Xianhui Bu
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4.  New versatile ligand family, pyrazine-modulated oligo-alpha-pyridylamino ligands, from coordination polymer to extended metal atom chains.

Authors:  Rayyat Huseyn Ismayilov; Wen-Zhen Wang; Gene-Hsiang Lee; Rui-Ren Wang; Isiah Po-Chun Liu; Chen-Yu Yeh; Shie-Ming Peng
Journal:  Dalton Trans       Date:  2007-05-09       Impact factor: 4.390

  4 in total
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1.  2-Amino-5-chloro-pyridinium nitrate.

Authors:  Donia Zaouali Zgolli; Habib Boughzala; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-17

2.  2-Amino-5-methyl-pyridinium nitrate.

Authors:  Xingchen Yan; Yuhua Fan; Caifeng Bi; Jian Zuo; Zhongyu Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
  2 in total

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