Literature DB >> 21203175

2-Amino-5-cyano-pyridinium chloride.

Xiao-Chun Wen1.   

Abstract

In the crystal structure of the title compound, C(6)H(6)N(3) (+)·Cl(-), cohesion is maintained by cation-anion N-H⋯Cl and cation-cation N-H⋯N hydrogen bonds, which link the ions into a three-dimensional network.

Entities:  

Year:  2008        PMID: 21203175      PMCID: PMC2962091          DOI: 10.1107/S1600536808020783

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of tetra­zole derivatives in coordination chemisty, see: Manzur et al. (2007 ▶); Ismayilov et al. (2007 ▶); Austria et al. (2007 ▶).

Experimental

Crystal data

C6H6N3 +·Cl− M = 155.59 Monoclinic, a = 4.0937 (8) Å b = 11.856 (2) Å c = 14.842 (3) Å β = 94.95 (3)° V = 717.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.45 mm−1 T = 298 (2) K 0.18 × 0.15 × 0.15 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.922, T max = 0.935 7307 measured reflections 1652 independent reflections 1252 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.102 S = 1.06 1652 reflections 91 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808020783/rz2232sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808020783/rz2232Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6N3+·ClF000 = 320
Mr = 155.59Dx = 1.440 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1250 reflections
a = 4.0937 (8) Åθ = 2.3–24.4º
b = 11.856 (2) ŵ = 0.45 mm1
c = 14.842 (3) ÅT = 298 (2) K
β = 94.95 (3)ºBlock, colourless
V = 717.7 (2) Å30.18 × 0.15 × 0.15 mm
Z = 4
Rigaku Mercury2 diffractometer1652 independent reflections
Radiation source: fine-focus sealed tube1252 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.044
Detector resolution: 13.6612 pixels mm-1θmax = 27.5º
T = 298(2) Kθmin = 3.3º
ω scansh = −5→5
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)k = −15→15
Tmin = 0.922, Tmax = 0.935l = −19→19
7307 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.102  w = 1/[σ2(Fo2) + (0.041P)2 + 0.2213P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1652 reflectionsΔρmax = 0.21 e Å3
91 parametersΔρmin = −0.23 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.44244 (14)0.60704 (5)0.17252 (4)0.0459 (2)
N20.0652 (4)0.69979 (14)0.32749 (11)0.0377 (4)
H2A0.10410.66500.27870.045*
C2−0.0884 (5)0.64335 (18)0.39019 (14)0.0385 (5)
H2B−0.15060.56870.38010.046*
N30.3183 (5)0.85595 (16)0.27271 (13)0.0507 (5)
H3A0.35670.81750.22560.061*
H3B0.38160.92500.27770.061*
C3−0.1527 (5)0.69550 (17)0.46837 (13)0.0352 (5)
C1−0.3034 (6)0.63422 (18)0.53757 (15)0.0442 (5)
C60.1619 (5)0.80885 (17)0.33739 (13)0.0355 (5)
C4−0.0595 (5)0.81008 (17)0.48174 (14)0.0398 (5)
H4A−0.10290.84710.53460.048*
N1−0.4184 (6)0.58515 (18)0.59282 (14)0.0626 (6)
C50.0921 (5)0.86506 (17)0.41756 (15)0.0414 (5)
H5A0.15100.94030.42610.050*
U11U22U33U12U13U23
Cl10.0522 (3)0.0472 (3)0.0398 (3)0.0063 (3)0.0124 (2)−0.0055 (2)
N20.0471 (10)0.0364 (9)0.0305 (9)−0.0004 (8)0.0091 (7)−0.0073 (7)
C20.0442 (12)0.0344 (11)0.0376 (11)−0.0020 (9)0.0082 (9)−0.0007 (9)
N30.0672 (13)0.0442 (11)0.0435 (11)−0.0080 (10)0.0207 (10)−0.0001 (9)
C30.0370 (11)0.0378 (11)0.0313 (10)0.0033 (9)0.0063 (8)0.0016 (8)
C10.0523 (13)0.0414 (12)0.0400 (12)0.0027 (10)0.0101 (10)−0.0022 (10)
C60.0370 (11)0.0366 (11)0.0332 (10)0.0022 (9)0.0054 (9)0.0028 (8)
C40.0486 (12)0.0384 (11)0.0334 (11)0.0036 (10)0.0104 (9)−0.0066 (9)
N10.0862 (16)0.0547 (13)0.0514 (12)−0.0085 (11)0.0316 (12)0.0009 (10)
C50.0530 (13)0.0306 (11)0.0419 (12)−0.0015 (9)0.0106 (10)−0.0060 (9)
N2—C21.345 (2)C3—C41.420 (3)
N2—C61.356 (3)C3—C11.440 (3)
N2—H2A0.8600C1—N11.140 (3)
C2—C31.360 (3)C6—C51.414 (3)
C2—H2B0.9300C4—C51.349 (3)
N3—C61.323 (3)C4—H4A0.9300
N3—H3A0.8600C5—H5A0.9300
N3—H3B0.8600
C2—N2—C6123.26 (17)C4—C3—C1120.62 (18)
C2—N2—H2A118.4N1—C1—C3179.0 (3)
C6—N2—H2A118.4N3—C6—N2118.60 (18)
N2—C2—C3120.02 (19)N3—C6—C5123.9 (2)
N2—C2—H2B120.0N2—C6—C5117.53 (18)
C3—C2—H2B120.0C5—C4—C3119.85 (18)
C6—N3—H3A120.0C5—C4—H4A120.1
C6—N3—H3B120.0C3—C4—H4A120.1
H3A—N3—H3B120.0C4—C5—C6120.34 (19)
C2—C3—C4118.98 (18)C4—C5—H5A119.8
C2—C3—C1120.37 (19)C6—C5—H5A119.8
C6—N2—C2—C3−0.3 (3)C2—C3—C4—C5−0.4 (3)
N2—C2—C3—C40.9 (3)C1—C3—C4—C5177.6 (2)
N2—C2—C3—C1−177.1 (2)C3—C4—C5—C6−0.7 (3)
C2—N2—C6—N3178.4 (2)N3—C6—C5—C4−177.9 (2)
C2—N2—C6—C5−0.8 (3)N2—C6—C5—C41.2 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···Cl10.862.293.0818 (18)153
N3—H3A···Cl10.862.653.363 (2)141
N3—H3A···N1i0.862.533.046 (3)120
N3—H3B···Cl1ii0.862.373.216 (2)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯Cl10.862.293.0818 (18)153
N3—H3A⋯Cl10.862.653.363 (2)141
N3—H3A⋯N1i0.862.533.046 (3)120
N3—H3B⋯Cl1ii0.862.373.216 (2)167

Symmetry codes: (i) ; (ii) .

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1.  2-Amino-5-cyano-pyridinium nitrate.

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