Literature DB >> 21578349

2-Amino-5-chloro-pyridinium nitrate.

Donia Zaouali Zgolli1, Habib Boughzala, Ahmed Driss.   

Abstract

The title structure, C(5)H(6)ClN(2) (+)·NO(3) (-), is held together by extensive hydrogen bonding between the NO(3) (-) ions and 2-amino-5-chloro-pyridinium H atoms. The cation-anion N-H⋯O hydrogen bonds link the ions into a zigzag- chain which develops parallel to the b axis. The structure may be compared with that of the related 2-amino-5-cyano-pyridinium nitrate.

Entities:  

Year:  2009        PMID: 21578349      PMCID: PMC2971019          DOI: 10.1107/S160053680904149X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For metal-organic frameworks involving amine derivatives, see: Manzur et al. (2007 ▶); Ismayilov et al. (2007 ▶); Austria et al. (2007 ▶). For related structures, see: Pourayoubi et al. (2007 ▶); Rademeyer (2005 ▶, 2007 ▶); Dai (2008 ▶).

Experimental

Crystal data

C5H6ClN2NO3 M = 191.58 Monoclinic, a = 4.788 (4) Å b = 13.029 (3) Å c = 12.779 (2) Å β = 101.445 (18)° V = 781.3 (7) Å3 Z = 4 Mo Kα radiation μ = 0.46 mm−1 T = 299 K 0.40 × 0.40 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.838, T max = 0.914 2057 measured reflections 1691 independent reflections 1312 reflections with I > 2σ(I) R int = 0.017 2 standard reflections frequency: 120 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.106 S = 1.02 1691 reflections 109 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680904149X/dn2495sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680904149X/dn2495Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6ClN2+·NO3F(000) = 392.0
Mr = 191.58Dx = 1.620 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 4.788 (4) Åθ = 10–15°
b = 13.029 (3) ŵ = 0.46 mm1
c = 12.779 (2) ÅT = 299 K
β = 101.445 (18)°Prism, yellow
V = 781.3 (7) Å30.40 × 0.40 × 0.20 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1312 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.017
graphiteθmax = 27.0°, θmin = 2.3°
Nonprofiled ω/2θ scansh = −1→6
Absorption correction: ψ scan (North et al., 1968)k = −16→1
Tmin = 0.838, Tmax = 0.914l = −16→15
2057 measured reflections2 standard reflections every 120 min
1691 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0566P)2 + 0.1965P] where P = (Fo2 + 2Fc2)/3
1691 reflections(Δ/σ)max < 0.001
109 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. Number of psi-scan sets used was 3 Theta correction was applied. Averaged transmission function was used. No Fourier smoothing was applied (North et al., 1968).
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.35469 (12)0.37026 (4)0.42068 (4)0.0558 (2)
N1−0.4403 (4)−0.03452 (11)0.63887 (12)0.0404 (4)
N2−0.2955 (4)0.22776 (13)0.73365 (13)0.0484 (4)
H2A−0.34870.16460.73010.058*
H2B−0.34400.26790.78040.058*
N3−0.0639 (3)0.19881 (11)0.59367 (12)0.0373 (3)
H3−0.11530.13560.59430.045*
C1−0.1377 (4)0.26344 (13)0.66666 (13)0.0349 (4)
C2−0.0428 (4)0.36615 (14)0.66731 (15)0.0399 (4)
H2−0.08540.41220.71750.048*
C30.1112 (4)0.39778 (15)0.59430 (15)0.0411 (4)
H3A0.17510.46520.59500.049*
C40.1737 (4)0.32811 (14)0.51762 (14)0.0373 (4)
C50.0878 (4)0.22883 (14)0.51921 (14)0.0383 (4)
H50.13180.18190.47010.046*
O1−0.5381 (3)−0.12309 (10)0.62043 (12)0.0545 (4)
O2−0.2376 (3)−0.00614 (11)0.59683 (13)0.0523 (4)
O3−0.5384 (4)0.02366 (12)0.70018 (14)0.0635 (4)
U11U22U33U12U13U23
Cl10.0681 (4)0.0477 (3)0.0615 (3)−0.0101 (2)0.0366 (3)−0.0017 (2)
N10.0517 (9)0.0326 (8)0.0380 (8)−0.0009 (7)0.0115 (7)0.0026 (6)
N20.0649 (10)0.0414 (9)0.0454 (9)−0.0019 (8)0.0269 (8)−0.0030 (7)
N30.0455 (8)0.0264 (7)0.0427 (8)−0.0034 (6)0.0156 (7)−0.0047 (6)
C10.0387 (9)0.0339 (8)0.0324 (8)0.0019 (7)0.0081 (7)−0.0013 (7)
C20.0495 (10)0.0318 (9)0.0389 (9)0.0003 (7)0.0098 (8)−0.0077 (7)
C30.0495 (10)0.0290 (8)0.0445 (10)−0.0039 (7)0.0088 (8)−0.0051 (7)
C40.0384 (9)0.0362 (9)0.0396 (9)−0.0013 (7)0.0136 (7)−0.0006 (7)
C50.0444 (9)0.0333 (9)0.0406 (9)−0.0005 (7)0.0171 (8)−0.0082 (7)
O10.0784 (10)0.0347 (7)0.0552 (8)−0.0152 (7)0.0251 (8)−0.0006 (6)
O20.0590 (9)0.0369 (7)0.0685 (9)−0.0069 (6)0.0308 (8)−0.0010 (6)
O30.0788 (11)0.0513 (9)0.0708 (10)−0.0089 (8)0.0403 (9)−0.0158 (8)
Cl1—C41.7358 (19)N3—H30.8600
N1—O31.247 (2)C1—C21.413 (3)
N1—O11.250 (2)C2—C31.363 (3)
N1—O21.255 (2)C2—H20.9300
N2—C11.333 (2)C3—C41.411 (3)
N2—H2A0.8600C3—H3A0.9300
N2—H2B0.8600C4—C51.359 (3)
N3—C11.355 (2)C5—H50.9300
N3—C51.364 (2)
O3—N1—O1120.41 (17)C3—C2—C1119.96 (16)
O3—N1—O2120.64 (16)C3—C2—H2120.0
O1—N1—O2118.93 (16)C1—C2—H2120.0
C1—N2—H2A120.0C2—C3—C4119.95 (17)
C1—N2—H2B120.0C2—C3—H3A120.0
H2A—N2—H2B120.0C4—C3—H3A120.0
C1—N3—C5123.36 (15)C5—C4—C3119.70 (17)
C1—N3—H3118.3C5—C4—Cl1120.49 (14)
C5—N3—H3118.3C3—C4—Cl1119.80 (14)
N2—C1—N3118.95 (16)C4—C5—N3119.23 (16)
N2—C1—C2123.31 (16)C4—C5—H5120.4
N3—C1—C2117.74 (15)N3—C5—H5120.4
D—H···AD—HH···AD···AD—H···A
N2—H2A···O30.862.052.900 (2)169
N2—H2B···O1i0.862.062.912 (2)174
N3—H3···O20.861.942.800 (2)179
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O30.862.052.900 (2)169
N2—H2B⋯O1i0.862.062.912 (2)174
N3—H3⋯O20.861.942.800 (2)179

Symmetry code: (i) .

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