| Literature DB >> 21578349 |
Donia Zaouali Zgolli1, Habib Boughzala, Ahmed Driss.
Abstract
The title structure, C(5)H(6)ClN(2) (+)·NO(3) (-), is held together by extensive hydrogen bonding between the NO(3) (-) ions and 2-amino-5-chloro-pyridinium H atoms. The cation-anion N-H⋯O hydrogen bonds link the ions into a zigzag- chain which develops parallel to the b axis. The structure may be compared with that of the related 2-amino-5-cyano-pyridinium nitrate.Entities:
Year: 2009 PMID: 21578349 PMCID: PMC2971019 DOI: 10.1107/S160053680904149X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6ClN2+·NO3− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 10–15° | |
| µ = 0.46 mm−1 | |
| β = 101.445 (18)° | Prism, yellow |
| 0.40 × 0.40 × 0.20 mm | |
| Enraf–Nonius CAD-4 diffractometer | 1312 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 27.0°, θmin = 2.3° |
| Nonprofiled ω/2θ scans | |
| Absorption correction: ψ scan (North | |
| 2057 measured reflections | 2 standard reflections every 120 min |
| 1691 independent reflections | intensity decay: none |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1691 reflections | (Δ/σ)max < 0.001 |
| 109 parameters | Δρmax = 0.19 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Experimental. Number of psi-scan sets used was 3
Theta correction was applied.
Averaged transmission function was used.
No Fourier smoothing was applied (North |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.35469 (12) | 0.37026 (4) | 0.42068 (4) | 0.0558 (2) | |
| N1 | −0.4403 (4) | −0.03452 (11) | 0.63887 (12) | 0.0404 (4) | |
| N2 | −0.2955 (4) | 0.22776 (13) | 0.73365 (13) | 0.0484 (4) | |
| H2A | −0.3487 | 0.1646 | 0.7301 | 0.058* | |
| H2B | −0.3440 | 0.2679 | 0.7804 | 0.058* | |
| N3 | −0.0639 (3) | 0.19881 (11) | 0.59367 (12) | 0.0373 (3) | |
| H3 | −0.1153 | 0.1356 | 0.5943 | 0.045* | |
| C1 | −0.1377 (4) | 0.26344 (13) | 0.66666 (13) | 0.0349 (4) | |
| C2 | −0.0428 (4) | 0.36615 (14) | 0.66731 (15) | 0.0399 (4) | |
| H2 | −0.0854 | 0.4122 | 0.7175 | 0.048* | |
| C3 | 0.1112 (4) | 0.39778 (15) | 0.59430 (15) | 0.0411 (4) | |
| H3A | 0.1751 | 0.4652 | 0.5950 | 0.049* | |
| C4 | 0.1737 (4) | 0.32811 (14) | 0.51762 (14) | 0.0373 (4) | |
| C5 | 0.0878 (4) | 0.22883 (14) | 0.51921 (14) | 0.0383 (4) | |
| H5 | 0.1318 | 0.1819 | 0.4701 | 0.046* | |
| O1 | −0.5381 (3) | −0.12309 (10) | 0.62043 (12) | 0.0545 (4) | |
| O2 | −0.2376 (3) | −0.00614 (11) | 0.59683 (13) | 0.0523 (4) | |
| O3 | −0.5384 (4) | 0.02366 (12) | 0.70018 (14) | 0.0635 (4) |
| Cl1 | 0.0681 (4) | 0.0477 (3) | 0.0615 (3) | −0.0101 (2) | 0.0366 (3) | −0.0017 (2) |
| N1 | 0.0517 (9) | 0.0326 (8) | 0.0380 (8) | −0.0009 (7) | 0.0115 (7) | 0.0026 (6) |
| N2 | 0.0649 (10) | 0.0414 (9) | 0.0454 (9) | −0.0019 (8) | 0.0269 (8) | −0.0030 (7) |
| N3 | 0.0455 (8) | 0.0264 (7) | 0.0427 (8) | −0.0034 (6) | 0.0156 (7) | −0.0047 (6) |
| C1 | 0.0387 (9) | 0.0339 (8) | 0.0324 (8) | 0.0019 (7) | 0.0081 (7) | −0.0013 (7) |
| C2 | 0.0495 (10) | 0.0318 (9) | 0.0389 (9) | 0.0003 (7) | 0.0098 (8) | −0.0077 (7) |
| C3 | 0.0495 (10) | 0.0290 (8) | 0.0445 (10) | −0.0039 (7) | 0.0088 (8) | −0.0051 (7) |
| C4 | 0.0384 (9) | 0.0362 (9) | 0.0396 (9) | −0.0013 (7) | 0.0136 (7) | −0.0006 (7) |
| C5 | 0.0444 (9) | 0.0333 (9) | 0.0406 (9) | −0.0005 (7) | 0.0171 (8) | −0.0082 (7) |
| O1 | 0.0784 (10) | 0.0347 (7) | 0.0552 (8) | −0.0152 (7) | 0.0251 (8) | −0.0006 (6) |
| O2 | 0.0590 (9) | 0.0369 (7) | 0.0685 (9) | −0.0069 (6) | 0.0308 (8) | −0.0010 (6) |
| O3 | 0.0788 (11) | 0.0513 (9) | 0.0708 (10) | −0.0089 (8) | 0.0403 (9) | −0.0158 (8) |
| Cl1—C4 | 1.7358 (19) | N3—H3 | 0.8600 |
| N1—O3 | 1.247 (2) | C1—C2 | 1.413 (3) |
| N1—O1 | 1.250 (2) | C2—C3 | 1.363 (3) |
| N1—O2 | 1.255 (2) | C2—H2 | 0.9300 |
| N2—C1 | 1.333 (2) | C3—C4 | 1.411 (3) |
| N2—H2A | 0.8600 | C3—H3A | 0.9300 |
| N2—H2B | 0.8600 | C4—C5 | 1.359 (3) |
| N3—C1 | 1.355 (2) | C5—H5 | 0.9300 |
| N3—C5 | 1.364 (2) | ||
| O3—N1—O1 | 120.41 (17) | C3—C2—C1 | 119.96 (16) |
| O3—N1—O2 | 120.64 (16) | C3—C2—H2 | 120.0 |
| O1—N1—O2 | 118.93 (16) | C1—C2—H2 | 120.0 |
| C1—N2—H2A | 120.0 | C2—C3—C4 | 119.95 (17) |
| C1—N2—H2B | 120.0 | C2—C3—H3A | 120.0 |
| H2A—N2—H2B | 120.0 | C4—C3—H3A | 120.0 |
| C1—N3—C5 | 123.36 (15) | C5—C4—C3 | 119.70 (17) |
| C1—N3—H3 | 118.3 | C5—C4—Cl1 | 120.49 (14) |
| C5—N3—H3 | 118.3 | C3—C4—Cl1 | 119.80 (14) |
| N2—C1—N3 | 118.95 (16) | C4—C5—N3 | 119.23 (16) |
| N2—C1—C2 | 123.31 (16) | C4—C5—H5 | 120.4 |
| N3—C1—C2 | 117.74 (15) | N3—C5—H5 | 120.4 |
| H··· | ||||
| N2—H2A···O3 | 0.86 | 2.05 | 2.900 (2) | 169 |
| N2—H2B···O1i | 0.86 | 2.06 | 2.912 (2) | 174 |
| N3—H3···O2 | 0.86 | 1.94 | 2.800 (2) | 179 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 2.05 | 2.900 (2) | 169 |
| N2—H2 | 0.86 | 2.06 | 2.912 (2) | 174 |
| N3—H3⋯O2 | 0.86 | 1.94 | 2.800 (2) | 179 |
Symmetry code: (i) .