Literature DB >> 22798765

2-Amino-5-methyl-pyridinium nitrate.

Xingchen Yan1, Yuhua Fan, Caifeng Bi, Jian Zuo, Zhongyu Zhang.   

Abstract

In the title salt, C(6)H(9)N(2) (+)·NO(3) (-), the 2-amino-5-methyl-pyridinium cation and the nitrate anion are cyclically linked through pyridinium and amine N-H⋯O hydrogen bonds [graph set R(4) (3)(12)]. These units are extended into a zigzag chain structure lying parallel to the a axis, through a second cyclic R(2) (2)(8) association involving amine N-H⋯O and aromatic C-H⋯O hydrogen bonds to nitrate O-atom acceptors.

Entities:  

Year:  2012        PMID: 22798765      PMCID: PMC3393900          DOI: 10.1107/S1600536812025196

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For supra­molecular architectures, see: Wang et al. (2012 ▶). For the potential of amine derivatives to form metal-organic frameworks, see: Manzur et al. (2007 ▶); Ismayilov et al. (2007 ▶); Austria et al. (2007 ▶). For related structures, see: Nahringbauer & Kvick (1977 ▶); Sherfinski & Marsh (1975 ▶); Zaouali Zgolli et al. (2009 ▶); Dai (2008 ▶). For graph-set analysis, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C6H9N2 +·NO3 M = 171.16 Monoclinic, a = 8.7711 (7) Å b = 15.7261 (13) Å c = 6.8539 (5) Å β = 117.455 (2)° V = 838.92 (12) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.49 × 0.38 × 0.21 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.948, T max = 0.977 2040 measured reflections 1251 independent reflections 1077 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.109 S = 1.08 1251 reflections 111 parameters 2 restraints H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.13 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812025196/zs2211sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025196/zs2211Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812025196/zs2211Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·NO3F(000) = 360
Mr = 171.16Dx = 1.355 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 1097 reflections
a = 8.7711 (7) Åθ = 2.6–25.8°
b = 15.7261 (13) ŵ = 0.11 mm1
c = 6.8539 (5) ÅT = 298 K
β = 117.455 (2)°Needle, light-yellow
V = 838.92 (12) Å30.49 × 0.38 × 0.21 mm
Z = 4
Bruker SMART CCD area-detector diffractometer1251 independent reflections
Radiation source: fine-focus sealed tube1077 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 25.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.948, Tmax = 0.977k = −15→18
2040 measured reflectionsl = −8→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0569P)2 + 0.1897P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
1251 reflectionsΔρmax = 0.15 e Å3
111 parametersΔρmin = −0.13 e Å3
2 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.010 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3088 (3)0.46545 (15)0.4791 (4)0.0474 (6)
H10.23620.42460.42390.057*
N20.5229 (4)0.36493 (16)0.6464 (4)0.0593 (7)
H2A0.44820.32510.58820.071*
H2B0.62890.35240.72930.071*
N30.4592 (3)0.14462 (15)0.6312 (5)0.0583 (7)
O10.3527 (3)0.19547 (15)0.5007 (4)0.0897 (9)
O20.5816 (3)0.17188 (14)0.8011 (5)0.0823 (8)
O30.4431 (3)0.06826 (15)0.5931 (5)0.0912 (9)
C10.4743 (3)0.44596 (15)0.6084 (4)0.0450 (7)
C20.5894 (4)0.51441 (18)0.6972 (5)0.0499 (7)
H20.70540.50420.78820.060*
C30.5302 (4)0.59519 (18)0.6493 (5)0.0534 (8)
H30.60770.63990.70780.064*
C40.3574 (4)0.61376 (17)0.5153 (5)0.0507 (7)
C50.2500 (4)0.54681 (17)0.4312 (5)0.0519 (7)
H50.13400.55650.33900.062*
C60.2926 (5)0.7045 (2)0.4632 (7)0.0767 (11)
H6A0.17210.70420.36230.115*
H6B0.35390.73390.39820.115*
H6C0.31090.73280.59630.115*
U11U22U33U12U13U23
N10.0453 (13)0.0430 (12)0.0475 (15)−0.0055 (9)0.0158 (11)−0.0011 (9)
N20.0636 (15)0.0432 (13)0.0635 (17)0.0047 (11)0.0229 (14)0.0007 (11)
N30.0418 (12)0.0480 (14)0.0724 (17)0.0017 (11)0.0154 (13)−0.0003 (13)
O10.0638 (16)0.0579 (14)0.094 (2)0.0036 (12)−0.0086 (14)0.0108 (13)
O20.0610 (14)0.0595 (14)0.0835 (17)0.0097 (11)−0.0034 (14)−0.0153 (12)
O30.0633 (15)0.0508 (13)0.120 (2)0.0005 (11)0.0085 (16)−0.0118 (13)
C10.0483 (17)0.0421 (14)0.0417 (17)−0.0008 (12)0.0183 (13)−0.0006 (12)
C20.0452 (14)0.0516 (16)0.0454 (17)−0.0025 (13)0.0146 (14)−0.0027 (13)
C30.0578 (17)0.0450 (15)0.058 (2)−0.0104 (12)0.0268 (16)−0.0094 (12)
C40.063 (2)0.0416 (15)0.0499 (18)0.0049 (13)0.0278 (16)0.0012 (13)
C50.0469 (16)0.0508 (15)0.0534 (19)0.0053 (13)0.0190 (14)0.0059 (12)
C60.090 (3)0.0451 (16)0.098 (3)0.0128 (16)0.046 (2)0.0119 (17)
N1—C11.342 (4)C2—C31.354 (4)
N1—C51.362 (4)C2—H20.9300
N1—H10.8600C3—C41.394 (4)
N2—C11.331 (4)C3—H30.9300
N2—H2A0.8600C4—C51.351 (4)
N2—H2B0.8600C4—C61.516 (4)
N3—O31.223 (3)C5—H50.9300
N3—O21.241 (3)C6—H6A0.9600
N3—O11.241 (3)C6—H6B0.9600
C1—C21.408 (4)C6—H6C0.9600
C1—N1—C5123.2 (2)C2—C3—C4122.3 (3)
C1—N1—H1118.4C2—C3—H3118.8
C5—N1—H1118.4C4—C3—H3118.8
C1—N2—H2A120.0C5—C4—C3116.7 (2)
C1—N2—H2B120.0C5—C4—C6121.4 (3)
H2A—N2—H2B120.0C3—C4—C6121.8 (3)
O3—N3—O2120.3 (3)C4—C5—N1121.2 (3)
O3—N3—O1120.3 (3)C4—C5—H5119.4
O2—N3—O1119.4 (2)N1—C5—H5119.4
N2—C1—N1119.9 (3)C4—C6—H6A109.5
N2—C1—C2123.1 (3)C4—C6—H6B109.5
N1—C1—C2116.9 (2)H6A—C6—H6B109.5
C3—C2—C1119.6 (3)C4—C6—H6C109.5
C3—C2—H2120.2H6A—C6—H6C109.5
C1—C2—H2120.2H6B—C6—H6C109.5
C5—N1—C1—N2−179.3 (3)C2—C3—C4—C5−1.0 (4)
C5—N1—C1—C20.4 (4)C2—C3—C4—C6179.9 (3)
N2—C1—C2—C3179.5 (3)C3—C4—C5—N11.1 (4)
N1—C1—C2—C3−0.2 (4)C6—C4—C5—N1−179.8 (3)
C1—C2—C3—C40.6 (4)C1—N1—C5—C4−0.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.861.952.808 (4)177
N1—H1···O3i0.862.533.122 (4)127
N2—H2A···O10.862.182.992 (4)157
N2—H2B···O1ii0.862.122.948 (4)160
C2—H2···O3ii0.932.453.304 (4)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.861.952.808 (4)177
N2—H2A⋯O10.862.182.992 (4)157
N2—H2B⋯O1ii 0.862.122.948 (4)160
C2—H2⋯O3ii 0.932.453.304 (4)153

Symmetry codes: (i) ; (ii) .

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