| Literature DB >> 22798765 |
Xingchen Yan1, Yuhua Fan, Caifeng Bi, Jian Zuo, Zhongyu Zhang.
Abstract
In the title salt, C(6)H(9)N(2) (+)·NO(3) (-), the 2-amino-5-methyl-pyridinium cation and the nitrate anion are cyclically linked through pyridinium and amine N-H⋯O hydrogen bonds [graph set R(4) (3)(12)]. These units are extended into a zigzag chain structure lying parallel to the a axis, through a second cyclic R(2) (2)(8) association involving amine N-H⋯O and aromatic C-H⋯O hydrogen bonds to nitrate O-atom acceptors.Entities:
Year: 2012 PMID: 22798765 PMCID: PMC3393900 DOI: 10.1107/S1600536812025196
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·NO3− | |
| Monoclinic, | Mo |
| Hall symbol: C -2yc | Cell parameters from 1097 reflections |
| θ = 2.6–25.8° | |
| µ = 0.11 mm−1 | |
| β = 117.455 (2)° | Needle, light-yellow |
| 0.49 × 0.38 × 0.21 mm | |
| Bruker SMART CCD area-detector diffractometer | 1251 independent reflections |
| Radiation source: fine-focus sealed tube | 1077 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 2040 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1251 reflections | Δρmax = 0.15 e Å−3 |
| 111 parameters | Δρmin = −0.13 e Å−3 |
| 2 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.010 (3) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.3088 (3) | 0.46545 (15) | 0.4791 (4) | 0.0474 (6) | |
| H1 | 0.2362 | 0.4246 | 0.4239 | 0.057* | |
| N2 | 0.5229 (4) | 0.36493 (16) | 0.6464 (4) | 0.0593 (7) | |
| H2A | 0.4482 | 0.3251 | 0.5882 | 0.071* | |
| H2B | 0.6289 | 0.3524 | 0.7293 | 0.071* | |
| N3 | 0.4592 (3) | 0.14462 (15) | 0.6312 (5) | 0.0583 (7) | |
| O1 | 0.3527 (3) | 0.19547 (15) | 0.5007 (4) | 0.0897 (9) | |
| O2 | 0.5816 (3) | 0.17188 (14) | 0.8011 (5) | 0.0823 (8) | |
| O3 | 0.4431 (3) | 0.06826 (15) | 0.5931 (5) | 0.0912 (9) | |
| C1 | 0.4743 (3) | 0.44596 (15) | 0.6084 (4) | 0.0450 (7) | |
| C2 | 0.5894 (4) | 0.51441 (18) | 0.6972 (5) | 0.0499 (7) | |
| H2 | 0.7054 | 0.5042 | 0.7882 | 0.060* | |
| C3 | 0.5302 (4) | 0.59519 (18) | 0.6493 (5) | 0.0534 (8) | |
| H3 | 0.6077 | 0.6399 | 0.7078 | 0.064* | |
| C4 | 0.3574 (4) | 0.61376 (17) | 0.5153 (5) | 0.0507 (7) | |
| C5 | 0.2500 (4) | 0.54681 (17) | 0.4312 (5) | 0.0519 (7) | |
| H5 | 0.1340 | 0.5565 | 0.3390 | 0.062* | |
| C6 | 0.2926 (5) | 0.7045 (2) | 0.4632 (7) | 0.0767 (11) | |
| H6A | 0.1721 | 0.7042 | 0.3623 | 0.115* | |
| H6B | 0.3539 | 0.7339 | 0.3982 | 0.115* | |
| H6C | 0.3109 | 0.7328 | 0.5963 | 0.115* |
| N1 | 0.0453 (13) | 0.0430 (12) | 0.0475 (15) | −0.0055 (9) | 0.0158 (11) | −0.0011 (9) |
| N2 | 0.0636 (15) | 0.0432 (13) | 0.0635 (17) | 0.0047 (11) | 0.0229 (14) | 0.0007 (11) |
| N3 | 0.0418 (12) | 0.0480 (14) | 0.0724 (17) | 0.0017 (11) | 0.0154 (13) | −0.0003 (13) |
| O1 | 0.0638 (16) | 0.0579 (14) | 0.094 (2) | 0.0036 (12) | −0.0086 (14) | 0.0108 (13) |
| O2 | 0.0610 (14) | 0.0595 (14) | 0.0835 (17) | 0.0097 (11) | −0.0034 (14) | −0.0153 (12) |
| O3 | 0.0633 (15) | 0.0508 (13) | 0.120 (2) | 0.0005 (11) | 0.0085 (16) | −0.0118 (13) |
| C1 | 0.0483 (17) | 0.0421 (14) | 0.0417 (17) | −0.0008 (12) | 0.0183 (13) | −0.0006 (12) |
| C2 | 0.0452 (14) | 0.0516 (16) | 0.0454 (17) | −0.0025 (13) | 0.0146 (14) | −0.0027 (13) |
| C3 | 0.0578 (17) | 0.0450 (15) | 0.058 (2) | −0.0104 (12) | 0.0268 (16) | −0.0094 (12) |
| C4 | 0.063 (2) | 0.0416 (15) | 0.0499 (18) | 0.0049 (13) | 0.0278 (16) | 0.0012 (13) |
| C5 | 0.0469 (16) | 0.0508 (15) | 0.0534 (19) | 0.0053 (13) | 0.0190 (14) | 0.0059 (12) |
| C6 | 0.090 (3) | 0.0451 (16) | 0.098 (3) | 0.0128 (16) | 0.046 (2) | 0.0119 (17) |
| N1—C1 | 1.342 (4) | C2—C3 | 1.354 (4) |
| N1—C5 | 1.362 (4) | C2—H2 | 0.9300 |
| N1—H1 | 0.8600 | C3—C4 | 1.394 (4) |
| N2—C1 | 1.331 (4) | C3—H3 | 0.9300 |
| N2—H2A | 0.8600 | C4—C5 | 1.351 (4) |
| N2—H2B | 0.8600 | C4—C6 | 1.516 (4) |
| N3—O3 | 1.223 (3) | C5—H5 | 0.9300 |
| N3—O2 | 1.241 (3) | C6—H6A | 0.9600 |
| N3—O1 | 1.241 (3) | C6—H6B | 0.9600 |
| C1—C2 | 1.408 (4) | C6—H6C | 0.9600 |
| C1—N1—C5 | 123.2 (2) | C2—C3—C4 | 122.3 (3) |
| C1—N1—H1 | 118.4 | C2—C3—H3 | 118.8 |
| C5—N1—H1 | 118.4 | C4—C3—H3 | 118.8 |
| C1—N2—H2A | 120.0 | C5—C4—C3 | 116.7 (2) |
| C1—N2—H2B | 120.0 | C5—C4—C6 | 121.4 (3) |
| H2A—N2—H2B | 120.0 | C3—C4—C6 | 121.8 (3) |
| O3—N3—O2 | 120.3 (3) | C4—C5—N1 | 121.2 (3) |
| O3—N3—O1 | 120.3 (3) | C4—C5—H5 | 119.4 |
| O2—N3—O1 | 119.4 (2) | N1—C5—H5 | 119.4 |
| N2—C1—N1 | 119.9 (3) | C4—C6—H6A | 109.5 |
| N2—C1—C2 | 123.1 (3) | C4—C6—H6B | 109.5 |
| N1—C1—C2 | 116.9 (2) | H6A—C6—H6B | 109.5 |
| C3—C2—C1 | 119.6 (3) | C4—C6—H6C | 109.5 |
| C3—C2—H2 | 120.2 | H6A—C6—H6C | 109.5 |
| C1—C2—H2 | 120.2 | H6B—C6—H6C | 109.5 |
| C5—N1—C1—N2 | −179.3 (3) | C2—C3—C4—C5 | −1.0 (4) |
| C5—N1—C1—C2 | 0.4 (4) | C2—C3—C4—C6 | 179.9 (3) |
| N2—C1—C2—C3 | 179.5 (3) | C3—C4—C5—N1 | 1.1 (4) |
| N1—C1—C2—C3 | −0.2 (4) | C6—C4—C5—N1 | −179.8 (3) |
| C1—C2—C3—C4 | 0.6 (4) | C1—N1—C5—C4 | −0.8 (4) |
| H··· | ||||
| N1—H1···O2i | 0.86 | 1.95 | 2.808 (4) | 177 |
| N1—H1···O3i | 0.86 | 2.53 | 3.122 (4) | 127 |
| N2—H2 | 0.86 | 2.18 | 2.992 (4) | 157 |
| N2—H2 | 0.86 | 2.12 | 2.948 (4) | 160 |
| C2—H2···O3ii | 0.93 | 2.45 | 3.304 (4) | 153 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O2i | 0.86 | 1.95 | 2.808 (4) | 177 |
| N2—H2 | 0.86 | 2.18 | 2.992 (4) | 157 |
| N2—H2 | 0.86 | 2.12 | 2.948 (4) | 160 |
| C2—H2⋯O3ii | 0.93 | 2.45 | 3.304 (4) | 153 |
Symmetry codes: (i) ; (ii) .