Literature DB >> 21200709

Diethyl [hydr-oxy(2-nitro-phen-yl)-meth-yl]phospho-nate.

Cai-Bao Chen1, Wei-Wei Jin, Xin-Yong Li.   

Abstract

In the title mol-ecule, C(11)H(16)NO(6)P, the nitro group is twisted out of the mean plane of the benzene ring at 29.91 (3)°. The two ethyl groups are disordered between two orientations in the ratios 0.784 (7)/0.216 (7) and 0.733 (6)/0.267 (6). Inter-molecular O-H⋯O hydrogen bonds link the mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2007        PMID: 21200709      PMCID: PMC2915213          DOI: 10.1107/S1600536807063453

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Allen et al. (1978 ▶); Hirschmann et al. (1994 ▶).

Experimental

Crystal data

C11H16NO6P M = 289.22 Triclinic, a = 7.5659 (13) Å b = 8.3844 (15) Å c = 12.557 (2) Å α = 73.356 (3)° β = 87.391 (3)° γ = 64.432 (3)° V = 685.6 (2) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 291 (2) K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART 4K CCD area-detector diffractometer Absorption correction: none 6168 measured reflections 2800 independent reflections 2381 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.157 S = 1.05 2800 reflections 193 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807063453/cv2361sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063453/cv2361Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H16NO6PZ = 2
Mr = 289.22F000 = 304
Triclinic, P1Dx = 1.401 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.5659 (13) ÅCell parameters from 3014 reflections
b = 8.3844 (15) Åθ = 2.8–28.0º
c = 12.557 (2) ŵ = 0.22 mm1
α = 73.356 (3)ºT = 291 (2) K
β = 87.391 (3)ºBlock, colourless
γ = 64.432 (3)º0.30 × 0.20 × 0.20 mm
V = 685.6 (2) Å3
Bruker SMART 4K CCD area-detector diffractometer2381 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.020
Monochromator: graphiteθmax = 26.5º
T = 291(2) Kθmin = 1.7º
φ and ω scansh = −9→9
Absorption correction: nonek = −10→10
6168 measured reflectionsl = −15→15
2800 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.157  w = 1/[σ2(Fo2) + (0.0955P)2 + 0.1438P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2800 reflectionsΔρmax = 0.38 e Å3
193 parametersΔρmin = −0.20 e Å3
1 restraintExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > σ(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
P10.33556 (9)0.33802 (9)0.13960 (4)0.0648 (2)
C10.6327 (3)0.2053 (3)0.31083 (16)0.0521 (4)
C20.5564 (3)0.2596 (3)0.40485 (16)0.0548 (5)
C30.6201 (4)0.1419 (3)0.51225 (18)0.0691 (6)
H30.56400.18190.57280.083*
C40.7655 (4)−0.0332 (3)0.5291 (2)0.0760 (6)
H40.8103−0.11250.60120.091*
C50.8460 (4)−0.0924 (3)0.4386 (2)0.0782 (7)
H50.9455−0.21150.44950.094*
C60.7784 (3)0.0256 (3)0.3323 (2)0.0676 (5)
H60.8328−0.01710.27230.081*
N10.4048 (3)0.4469 (3)0.39566 (16)0.0673 (5)
C70.5651 (3)0.3239 (3)0.19053 (16)0.0574 (5)
H70.54810.44910.18390.069*
C80.0059 (6)0.5738 (7)0.1961 (3)0.0961 (13)0.784 (7)
H8A−0.04690.60010.12080.115*0.784 (7)
H8B0.03540.67440.19870.115*0.784 (7)
C9−0.1387 (9)0.5585 (11)0.2750 (7)0.1132 (17)0.784 (7)
H9A−0.17310.46370.26880.170*0.784 (7)
H9B−0.25430.67460.25840.170*0.784 (7)
H9C−0.08330.52710.34960.170*0.784 (7)
C100.2216 (8)0.0840 (9)0.1406 (5)0.1275 (19)0.733 (6)
H10A0.18650.03090.21290.153*0.733 (6)
H10B0.10720.19750.10390.153*0.733 (6)
C110.2598 (15)−0.0343 (12)0.0801 (5)0.133 (2)0.733 (6)
H11A0.27440.02370.00460.199*0.733 (6)
H11B0.1531−0.06770.08110.199*0.733 (6)
H11C0.3792−0.14360.11150.199*0.733 (6)
C8'−0.024 (2)0.471 (3)0.2069 (13)0.0961 (13)0.216 (7)
H8C−0.06150.51260.12740.115*0.216 (7)
H8D−0.06360.37350.24120.115*0.216 (7)
C9'−0.112 (4)0.604 (4)0.247 (3)0.1132 (17)0.216 (7)
H9D−0.16370.56240.31480.170*0.216 (7)
H9E−0.21740.70160.19410.170*0.216 (7)
H9F−0.02090.64820.26190.170*0.216 (7)
C10'0.340 (2)0.050 (2)0.0838 (15)0.1275 (19)0.267 (6)
H10C0.25550.14600.01940.153*0.267 (6)
H10D0.4623−0.02450.05790.153*0.267 (6)
C11'0.254 (5)−0.055 (4)0.1332 (16)0.133 (2)0.267 (6)
H11D0.3195−0.12790.20640.199*0.267 (6)
H11E0.2613−0.13480.09010.199*0.267 (6)
H11F0.11880.02210.13940.199*0.267 (6)
O10.2928 (3)0.4664 (3)0.46827 (17)0.0988 (6)
O20.3979 (3)0.5760 (2)0.31795 (16)0.0925 (6)
O30.7091 (3)0.2488 (3)0.12000 (14)0.0823 (5)
H3A0.711 (6)0.338 (3)0.072 (2)0.123*
O40.2695 (3)0.4578 (3)0.02454 (13)0.0976 (7)
O50.1853 (2)0.3993 (2)0.22587 (12)0.0713 (4)
O60.3792 (3)0.1322 (3)0.15899 (16)0.0909 (6)
U11U22U33U12U13U23
P10.0644 (4)0.0939 (5)0.0463 (3)−0.0471 (3)0.0061 (2)−0.0157 (3)
C10.0521 (10)0.0583 (10)0.0551 (10)−0.0320 (8)0.0044 (8)−0.0172 (8)
C20.0544 (11)0.0607 (11)0.0555 (10)−0.0299 (9)0.0010 (8)−0.0181 (8)
C30.0756 (15)0.0867 (15)0.0526 (11)−0.0434 (13)−0.0008 (10)−0.0178 (10)
C40.0763 (15)0.0768 (14)0.0667 (14)−0.0378 (13)−0.0155 (11)0.0005 (11)
C50.0650 (14)0.0618 (12)0.0967 (18)−0.0248 (11)−0.0065 (13)−0.0101 (12)
C60.0627 (13)0.0669 (12)0.0765 (14)−0.0292 (10)0.0083 (10)−0.0249 (11)
N10.0710 (12)0.0710 (11)0.0634 (11)−0.0281 (9)0.0009 (9)−0.0288 (9)
C70.0570 (11)0.0715 (12)0.0523 (10)−0.0357 (10)0.0109 (8)−0.0193 (9)
C80.069 (2)0.089 (3)0.091 (2)−0.0168 (18)0.0057 (17)0.001 (2)
C90.070 (3)0.132 (5)0.152 (5)−0.049 (2)0.049 (3)−0.061 (4)
C100.105 (4)0.176 (5)0.175 (5)−0.095 (4)0.042 (3)−0.107 (4)
C110.192 (5)0.146 (4)0.114 (5)−0.114 (4)−0.006 (6)−0.048 (5)
C8'0.069 (2)0.089 (3)0.091 (2)−0.0168 (18)0.0057 (17)0.001 (2)
C9'0.070 (3)0.132 (5)0.152 (5)−0.049 (2)0.049 (3)−0.061 (4)
C10'0.105 (4)0.176 (5)0.175 (5)−0.095 (4)0.042 (3)−0.107 (4)
C11'0.192 (5)0.146 (4)0.114 (5)−0.114 (4)−0.006 (6)−0.048 (5)
O10.0921 (14)0.1054 (14)0.0858 (12)−0.0239 (11)0.0255 (11)−0.0433 (11)
O20.1164 (16)0.0613 (9)0.0886 (12)−0.0296 (10)0.0086 (11)−0.0210 (9)
O30.0725 (11)0.1066 (14)0.0690 (10)−0.0401 (10)0.0278 (8)−0.0296 (9)
O40.0928 (13)0.1595 (19)0.0495 (9)−0.0782 (13)0.0003 (8)−0.0059 (10)
O50.0563 (9)0.0873 (10)0.0569 (8)−0.0282 (8)0.0041 (7)−0.0067 (7)
O60.0959 (14)0.1074 (14)0.1021 (14)−0.0641 (12)0.0083 (10)−0.0463 (11)
P1—O41.4653 (18)C9—H9B0.9600
P1—O61.556 (2)C9—H9C0.9600
P1—O51.5598 (16)C10—C111.345 (9)
P1—C71.822 (2)C10—O61.461 (5)
C1—C61.386 (3)C10—H10A0.9700
C1—C21.398 (3)C10—H10B0.9700
C1—C71.518 (3)C11—H11A0.9600
C2—C31.383 (3)C11—H11B0.9600
C2—N11.466 (3)C11—H11C0.9600
C3—C41.364 (4)C8'—C9'1.26 (3)
C3—H30.9300C8'—O51.435 (15)
C4—C51.381 (4)C8'—H8C0.9700
C4—H40.9300C8'—H8D0.9700
C5—C61.375 (3)C9'—H9D0.9600
C5—H50.9300C9'—H9E0.9600
C6—H60.9300C9'—H9F0.9600
N1—O11.213 (3)C10'—C11'1.31 (3)
N1—O21.215 (3)C10'—O61.426 (13)
C7—O31.417 (2)C10'—H10C0.9700
C7—H70.9800C10'—H10D0.9700
C8—O51.463 (4)C11'—H11D0.9600
C8—C91.465 (7)C11'—H11E0.9600
C8—H8A0.9700C11'—H11F0.9600
C8—H8B0.9700O3—H3A0.817 (10)
C9—H9A0.9600
O4—P1—O6115.38 (12)H8A—C8—H8B108.3
O4—P1—O5114.16 (11)C11—C10—O6116.7 (6)
O6—P1—O5103.70 (10)C11—C10—H10A108.1
O4—P1—C7112.67 (10)O6—C10—H10A108.1
O6—P1—C7103.71 (10)C11—C10—H10B108.1
O5—P1—C7106.13 (9)O6—C10—H10B108.1
C6—C1—C2115.53 (19)H10A—C10—H10B107.3
C6—C1—C7118.91 (18)C9'—C8'—O5111 (2)
C2—C1—C7125.53 (17)C9'—C8'—H8C109.4
C3—C2—C1122.48 (19)O5—C8'—H8C109.4
C3—C2—N1115.65 (18)C9'—C8'—H8D109.4
C1—C2—N1121.86 (17)O5—C8'—H8D109.4
C4—C3—C2119.8 (2)H8C—C8'—H8D108.0
C4—C3—H3120.1C8'—C9'—H9D109.5
C2—C3—H3120.1C8'—C9'—H9E109.5
C3—C4—C5119.7 (2)H9D—C9'—H9E109.5
C3—C4—H4120.2C8'—C9'—H9F109.5
C5—C4—H4120.2H9D—C9'—H9F109.5
C6—C5—C4119.7 (2)H9E—C9'—H9F109.5
C6—C5—H5120.1C11'—C10'—O6110.4 (15)
C4—C5—H5120.1C11'—C10'—H10C109.6
C5—C6—C1122.8 (2)O6—C10'—H10C109.6
C5—C6—H6118.6C11'—C10'—H10D109.6
C1—C6—H6118.6O6—C10'—H10D109.6
O1—N1—O2122.7 (2)H10C—C10'—H10D108.1
O1—N1—C2117.8 (2)C10'—C11'—H11D109.5
O2—N1—C2119.50 (19)C10'—C11'—H11E109.5
O3—C7—C1109.76 (17)H11D—C11'—H11E109.5
O3—C7—P1106.87 (14)C10'—C11'—H11F109.5
C1—C7—P1113.49 (13)H11D—C11'—H11F109.5
O3—C7—H7108.9H11E—C11'—H11F109.5
C1—C7—H7108.9C7—O3—H3A106 (3)
P1—C7—H7108.9C8'—O5—P1125.3 (7)
O5—C8—C9109.0 (4)C8—O5—P1122.36 (19)
O5—C8—H8A109.9C10'—O6—C1045.2 (6)
C9—C8—H8A109.9C10'—O6—P1128.7 (8)
O5—C8—H8B109.9C10—O6—P1120.3 (3)
C9—C8—H8B109.9
C6—C1—C2—C3−0.6 (3)O6—P1—C7—C1−56.38 (16)
C7—C1—C2—C3177.55 (19)O5—P1—C7—C152.54 (17)
C6—C1—C2—N1178.54 (19)C9'—C8'—O5—C8−39.6 (17)
C7—C1—C2—N1−3.3 (3)C9'—C8'—O5—P1−139.1 (16)
C1—C2—C3—C41.3 (3)C9—C8—O5—C8'49.1 (11)
N1—C2—C3—C4−177.8 (2)C9—C8—O5—P1156.6 (4)
C2—C3—C4—C5−0.9 (4)O4—P1—O5—C8'39.3 (10)
C3—C4—C5—C6−0.2 (4)O6—P1—O5—C8'−87.1 (10)
C4—C5—C6—C11.0 (4)C7—P1—O5—C8'164.0 (10)
C2—C1—C6—C5−0.6 (3)O4—P1—O5—C8−7.3 (3)
C7—C1—C6—C5−178.8 (2)O6—P1—O5—C8−133.7 (3)
C3—C2—N1—O1−29.3 (3)C7—P1—O5—C8117.4 (3)
C1—C2—N1—O1151.6 (2)C11'—C10'—O6—C10−35.3 (18)
C3—C2—N1—O2149.4 (2)C11'—C10'—O6—P1−131.9 (19)
C1—C2—N1—O2−29.8 (3)C11—C10—O6—C10'16.3 (12)
C6—C1—C7—O3−19.2 (2)C11—C10—O6—P1132.5 (6)
C2—C1—C7—O3162.69 (18)O4—P1—O6—C10'−8.9 (8)
C6—C1—C7—P1100.3 (2)O5—P1—O6—C10'116.7 (8)
C2—C1—C7—P1−77.8 (2)C7—P1—O6—C10'−132.6 (8)
O4—P1—C7—O3−60.70 (19)O4—P1—O6—C10−63.6 (3)
O6—P1—C7—O364.75 (16)O5—P1—O6—C1062.0 (3)
O5—P1—C7—O3173.68 (13)C7—P1—O6—C10172.7 (3)
O4—P1—C7—C1178.17 (15)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O4i0.82 (1)1.857 (11)2.671 (3)174 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O4i0.82 (1)1.857 (11)2.671 (3)174 (4)

Symmetry code: (i) .

  2 in total

1.  Phosphonopeptides, a new class of synthetic antibacterial agents.

Authors:  J G Allen; F R Atherton; M J Hall; C H Hassall; S W Holmes; R W Lambert; L J Nisbet; P S Ringrose
Journal:  Nature       Date:  1978-03-02       Impact factor: 49.962

2.  Peptide synthesis catalyzed by an antibody containing a binding site for variable amino acids.

Authors:  R Hirschmann; A B Smith; C M Taylor; P A Benkovic; S D Taylor; K M Yager; P A Sprengeler; S J Benkovic
Journal:  Science       Date:  1994-07-08       Impact factor: 47.728

  2 in total
  3 in total

1.  Dimethyl [hydr-oxy(2-nitro-phen-yl)meth-yl]phospho-nate.

Authors:  M Nawaz Tahir; Nurcan Acar; Hamza Yilmaz; Muhammad Ilyas Tariq; Dinçer Ulkü
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-21

2.  4-[(Dieth-oxy-phosphino-yl)meth-yl]benzoic acid.

Authors:  S Karthikeyan; K Sethusankar; Ganesan Gobi Rajeshwaran; Arasambattu K Mohanakrishnan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-09

3.  Diethyl [2,2,2-trifluoro-1-phenyl-sulfonyl-amino-1-(trifluoro-meth-yl)eth-yl]phospho-nate.

Authors:  Sanjeeva J Wijeyesakere; Faik A Nasser; Jeff W Kampf; Alexey Y Aksinenko; Vladimir B Sokolov; Vladimir V Malygin; Galina F Makhaeva; Rudy J Richardson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-05
  3 in total

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