Literature DB >> 19079747

Diethyl [2,2,2-trifluoro-1-phenyl-sulfonyl-amino-1-(trifluoro-meth-yl)eth-yl]phospho-nate.

Sanjeeva J Wijeyesakere, Faik A Nasser, Jeff W Kampf, Alexey Y Aksinenko, Vladimir B Sokolov, Vladimir V Malygin, Galina F Makhaeva, Rudy J Richardson.   

Abstract

The title compound, C(13)H(16)F(6)NO(5)PS, is of inter-est with respect to inhibition of serine hydro-lases. Its structure contains a 1.8797 (13) Å P-C bond and two inter-molecular N-H⋯O=P hydrogen bonds, resulting in centrosymmetric dimers. An intra-molecular N-H⋯O=P hydrogen bond is also present.

Entities:  

Year:  2008        PMID: 19079747      PMCID: PMC2600860          DOI: 10.1107/S1600536808020175

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Chekhlov et al. (1995 ▶); Makhaeva et al. (2005 ▶); Adams et al. (2008 ▶); Chen et al. (2008 ▶); Guo et al. (2008 ▶); Kachkovskyi & Kolodiazhnyi (2007 ▶); Liu et al. (1995 ▶).

Experimental

Crystal data

C13H16F6NO5PS M = 443.3 Monoclinic, a = 11.6913 (15) Å b = 10.1375 (13) Å c = 15.5955 (19) Å β = 93.264 (2)° V = 1845.4 (4) Å3 Z = 4 Mo Kα radiation μ = 0.34 mm−1 T = 113 (2) K 0.60 × 0.42 × 0.40 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.820, T max = 0.874 20001 measured reflections 4568 independent reflections 4027 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.082 S = 1.03 4568 reflections 246 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808020175/si2094sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808020175/si2094Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16F6NO5PSF000 = 904
Mr = 443.3Dx = 1.596 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6567 reflections
a = 11.6913 (15) Åθ = 2.9–28.3º
b = 10.1375 (13) ŵ = 0.35 mm1
c = 15.5955 (19) ÅT = 113 (2) K
β = 93.264 (2)ºPlate, colourless
V = 1845.4 (4) Å30.60 × 0.42 × 0.40 mm
Z = 4
Bruker SMART CCD area-detector diffractometer4568 independent reflections
Radiation source: fine-focus sealed tube4027 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.022
T = 113(2) Kθmax = 28.3º
φ and ω scansθmin = 2.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 2003)h = −15→15
Tmin = 0.820, Tmax = 0.874k = −13→13
20001 measured reflectionsl = −20→20
Refinement on F2H-atom parameters constrained
Least-squares matrix: full  w = 1/[σ2(Fo2) + (0.0427P)2 + 0.6948P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.029(Δ/σ)max = 0.001
wR(F2) = 0.082Δρmax = 0.34 e Å3
S = 1.03Δρmin = −0.33 e Å3
4568 reflectionsExtinction correction: none
246 parameters
Experimental. 2103 frames × 20 sec @ 4.980 cm; 0.3 ° scans in ω & φ
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.64284 (3)0.17485 (3)0.04487 (2)0.02726 (9)
S10.33796 (3)0.15018 (3)0.174771 (18)0.02622 (8)
N10.46059 (9)0.12554 (10)0.13045 (6)0.0247 (2)
H1A0.45690.06990.08700.030*
F10.73735 (8)0.14398 (10)0.24829 (6)0.0445 (2)
F20.66649 (8)−0.02537 (9)0.17986 (5)0.0429 (2)
F30.57711 (8)0.05961 (9)0.28299 (5)0.0412 (2)
F40.56725 (9)0.33003 (9)0.27115 (5)0.0434 (2)
F50.67125 (8)0.38612 (9)0.16867 (6)0.0415 (2)
F60.48768 (7)0.39288 (8)0.14967 (5)0.03547 (19)
C10.26341 (11)0.26504 (13)0.10763 (7)0.0255 (2)
C20.24216 (12)0.23293 (14)0.02114 (8)0.0307 (3)
H2A0.26760.1513−0.00090.037*
C30.18337 (14)0.32241 (16)−0.03191 (9)0.0398 (3)
H3A0.16820.3022−0.09090.048*
C40.14648 (15)0.44131 (17)0.00055 (9)0.0435 (4)
H4A0.10740.5028−0.03660.052*
C50.16614 (14)0.47135 (16)0.08707 (9)0.0402 (3)
H5A0.13910.55220.10910.048*
C60.22553 (12)0.38277 (14)0.14136 (8)0.0313 (3)
H6A0.23990.40260.20050.038*
C70.57400 (11)0.18007 (12)0.15084 (8)0.0258 (2)
C80.57452 (12)0.32405 (14)0.18606 (9)0.0326 (3)
C90.63978 (13)0.08914 (14)0.21698 (9)0.0342 (3)
C100.86488 (14)0.16185 (18)0.02046 (12)0.0464 (4)
H10A0.88760.2351−0.01700.056*
H10B0.84230.0853−0.01610.056*
C110.96179 (17)0.1256 (3)0.08278 (18)0.0793 (7)
H11A0.98200.20170.11940.119*
H11B1.02830.09950.05120.119*
H11C0.93860.05190.11860.119*
C120.50917 (13)0.29279 (16)−0.07438 (9)0.0367 (3)
H12A0.45900.3713−0.07280.044*
H12B0.46130.2134−0.06740.044*
C130.56368 (16)0.28690 (17)−0.15912 (10)0.0455 (4)
H13A0.61550.3622−0.16400.068*
H13B0.50400.2901−0.20580.068*
H13C0.60710.2046−0.16280.068*
O10.27788 (9)0.02744 (10)0.16554 (6)0.0339 (2)
O20.36007 (9)0.20787 (10)0.25771 (5)0.0346 (2)
O30.61539 (8)0.04887 (9)0.00278 (6)0.0311 (2)
O40.77052 (9)0.20205 (12)0.07141 (7)0.0435 (3)
O50.59785 (9)0.29985 (10)−0.00394 (6)0.0348 (2)
U11U22U33U12U13U23
P10.02908 (17)0.02691 (17)0.02539 (16)0.00270 (12)−0.00198 (12)−0.00504 (12)
S10.03576 (17)0.02732 (16)0.01571 (13)0.00577 (12)0.00261 (11)0.00207 (10)
N10.0305 (5)0.0241 (5)0.0192 (4)0.0051 (4)−0.0018 (4)−0.0048 (4)
F10.0422 (5)0.0527 (5)0.0364 (4)0.0091 (4)−0.0185 (4)−0.0058 (4)
F20.0575 (5)0.0330 (4)0.0363 (4)0.0205 (4)−0.0127 (4)−0.0031 (3)
F30.0557 (5)0.0430 (5)0.0236 (4)0.0084 (4)−0.0093 (4)0.0041 (3)
F40.0591 (6)0.0422 (5)0.0277 (4)0.0078 (4)−0.0074 (4)−0.0163 (3)
F50.0415 (5)0.0342 (5)0.0479 (5)−0.0042 (4)−0.0065 (4)−0.0146 (4)
F60.0423 (4)0.0229 (4)0.0404 (4)0.0082 (3)−0.0050 (3)−0.0057 (3)
C10.0292 (6)0.0292 (6)0.0181 (5)0.0059 (5)0.0025 (4)0.0009 (4)
C20.0388 (7)0.0329 (7)0.0202 (5)0.0110 (5)0.0005 (5)−0.0027 (5)
C30.0523 (9)0.0449 (8)0.0215 (6)0.0175 (7)−0.0052 (6)−0.0026 (5)
C40.0550 (9)0.0439 (8)0.0304 (7)0.0243 (7)−0.0075 (6)0.0003 (6)
C50.0500 (8)0.0379 (8)0.0320 (7)0.0214 (7)−0.0022 (6)−0.0062 (6)
C60.0371 (7)0.0346 (7)0.0222 (5)0.0100 (5)0.0012 (5)−0.0042 (5)
C70.0319 (6)0.0237 (6)0.0210 (5)0.0065 (5)−0.0062 (4)−0.0044 (4)
C80.0386 (7)0.0287 (6)0.0294 (6)0.0053 (5)−0.0067 (5)−0.0091 (5)
C90.0412 (7)0.0339 (7)0.0261 (6)0.0100 (6)−0.0105 (5)−0.0032 (5)
C100.0367 (8)0.0492 (9)0.0545 (10)−0.0068 (7)0.0128 (7)−0.0050 (7)
C110.0352 (9)0.110 (2)0.0913 (17)0.0118 (11)−0.0041 (10)−0.0132 (15)
C120.0365 (7)0.0387 (8)0.0345 (7)0.0026 (6)−0.0009 (5)0.0107 (6)
C130.0660 (11)0.0390 (8)0.0318 (7)0.0067 (7)0.0048 (7)0.0056 (6)
O10.0433 (5)0.0309 (5)0.0280 (4)−0.0005 (4)0.0077 (4)0.0054 (4)
O20.0497 (6)0.0391 (5)0.0150 (4)0.0111 (4)0.0014 (4)−0.0011 (4)
O30.0386 (5)0.0286 (5)0.0259 (4)0.0044 (4)0.0006 (4)−0.0070 (4)
O40.0289 (5)0.0543 (7)0.0466 (6)0.0028 (5)−0.0028 (4)−0.0166 (5)
O50.0443 (6)0.0288 (5)0.0308 (5)−0.0027 (4)−0.0012 (4)0.0026 (4)
P1—O31.4632 (10)C4—C51.390 (2)
P1—O41.5509 (11)C4—H4A0.9500
P1—O51.5545 (10)C5—C61.3923 (19)
P1—C71.8797 (13)C5—H5A0.9500
S1—O21.4296 (9)C6—H6A0.9500
S1—O11.4321 (11)C7—C91.5539 (17)
S1—N11.6458 (11)C7—C81.5594 (17)
S1—C11.7629 (12)C10—O41.4540 (19)
N1—C71.4549 (16)C10—C111.496 (3)
N1—H1A0.8800C10—H10A0.9900
F1—C91.3361 (17)C10—H10B0.9900
F2—C91.3419 (16)C11—H11A0.9800
F3—C91.3313 (18)C11—H11B0.9800
F4—C81.3359 (16)C11—H11C0.9800
F5—C81.3354 (18)C12—O51.4687 (17)
F6—C81.3320 (16)C12—C131.501 (2)
C1—C61.3870 (18)C12—H12A0.9900
C1—C21.3960 (16)C12—H12B0.9900
C2—C31.3838 (18)C13—H13A0.9800
C2—H2A0.9500C13—H13B0.9800
C3—C41.386 (2)C13—H13C0.9800
C3—H3A0.9500
O3—P1—O4117.26 (6)F6—C8—F5107.48 (12)
O3—P1—O5115.62 (6)F6—C8—F4108.02 (11)
O4—P1—O5106.23 (6)F5—C8—F4106.43 (11)
O3—P1—C7108.97 (6)F6—C8—C7110.65 (10)
O4—P1—C7102.36 (6)F5—C8—C7110.84 (11)
O5—P1—C7104.94 (6)F4—C8—C7113.15 (11)
O2—S1—O1120.58 (6)F3—C9—F1107.88 (11)
O2—S1—N1108.97 (6)F3—C9—F2106.91 (12)
O1—S1—N1105.06 (6)F1—C9—F2107.63 (12)
O2—S1—C1108.97 (6)F3—C9—C7111.92 (11)
O1—S1—C1106.92 (6)F1—C9—C7112.07 (12)
N1—S1—C1105.30 (5)F2—C9—C7110.20 (10)
C7—N1—S1130.95 (8)O4—C10—C11106.50 (16)
C7—N1—H1A114.5O4—C10—H10A110.4
S1—N1—H1A114.5C11—C10—H10A110.4
C6—C1—C2121.60 (11)O4—C10—H10B110.4
C6—C1—S1120.05 (9)C11—C10—H10B110.4
C2—C1—S1118.34 (10)H10A—C10—H10B108.6
C3—C2—C1118.67 (12)C10—C11—H11A109.5
C3—C2—H2A120.7C10—C11—H11B109.5
C1—C2—H2A120.7H11A—C11—H11B109.5
C2—C3—C4120.41 (13)C10—C11—H11C109.5
C2—C3—H3A119.8H11A—C11—H11C109.5
C4—C3—H3A119.8H11B—C11—H11C109.5
C3—C4—C5120.51 (13)O5—C12—C13110.09 (13)
C3—C4—H4A119.7O5—C12—H12A109.6
C5—C4—H4A119.7C13—C12—H12A109.6
C4—C5—C6119.89 (13)O5—C12—H12B109.6
C4—C5—H5A120.1C13—C12—H12B109.6
C6—C5—H5A120.1H12A—C12—H12B108.2
C1—C6—C5118.90 (12)C12—C13—H13A109.5
C1—C6—H6A120.5C12—C13—H13B109.5
C5—C6—H6A120.5H13A—C13—H13B109.5
N1—C7—C9109.28 (11)C12—C13—H13C109.5
N1—C7—C8114.70 (10)H13A—C13—H13C109.5
C9—C7—C8109.24 (10)H13B—C13—H13C109.5
N1—C7—P1103.16 (8)C10—O4—P1123.57 (10)
C9—C7—P1110.27 (9)C12—O5—P1122.10 (9)
C8—C7—P1110.04 (9)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O30.882.342.8730 (14)119
N1—H1A···O3i0.882.002.8324 (14)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O30.882.342.8730 (14)119
N1—H1A⋯O3i0.882.002.8324 (14)158

Symmetry code: (i) .

  5 in total

1.  Fluorinated alpha-aminophosphonates--a new type of irreversible inhibitors of serine hydrolases.

Authors:  G F Makhaeva; V V Malygin; A Yu Aksinenko; V B Sokolov; N N Strakhova; A N Rasdolsky; R J Richardson; I V Martynov
Journal:  Dokl Biochem Biophys       Date:  2005 Jan-Feb       Impact factor: 0.788

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Crystal structure of PhnH: an essential component of carbon-phosphorus lyase in Escherichia coli.

Authors:  Melanie A Adams; Yan Luo; Bjarne Hove-Jensen; Shu-Mei He; Laura M van Staalduinen; David L Zechel; Zongchao Jia
Journal:  J Bacteriol       Date:  2007-11-09       Impact factor: 3.490

4.  Diethyl [hydr-oxy(2-nitro-phen-yl)-meth-yl]phospho-nate.

Authors:  Cai-Bao Chen; Wei-Wei Jin; Xin-Yong Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

5.  Dimethyl [1-(1-allyl-5-iodo-1H-indol-3-yl)-3-hydroxy-prop-yl]phospho-nate.

Authors:  Ying-Cen Guo; Xu-Fan Wang; Yu Ding
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-09
  5 in total
  4 in total

1.  Kinetics and mechanism of inhibition of serine esterases by fluorinated carbethoxy 1-aminophosphonates.

Authors:  G F Makhaeva; S V Lushchekina; O G Serebryakova; A Yu Aksinenko; T V Goreva; R J Richardson; I V Martynov
Journal:  Dokl Biochem Biophys       Date:  2013-08-23       Impact factor: 0.788

2.  2-benzenesulfonamidobenzoic Acid.

Authors:  Abdullah Mohamed Asiri; Mehmet Akkurt; Salman A Khan; Muhammad Nadeem Arshad; Islam Ullah Khan; Hafiz Muhammad Adeel Sharif
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14

3.  Kinetics and mechanism of inhibition of serine esterases by fluorinated aminophosphonates.

Authors:  G F Makhaeva; A Y Aksinenko; V B Sokolov; I I Baskin; V A Palyulin; N S Zefirov; N D Hein; J W Kampf; S J Wijeyesakere; R J Richardson
Journal:  Chem Biol Interact       Date:  2009-12-23       Impact factor: 5.192

4.  2-(4-Bromo-benzene-sulfonamido)-2-phenyl-acetic acid monohydrate.

Authors:  Muhammad Nadeem Arshad; Islam Ullah Khan; Mehmet Akkurt; Muhammad Shafiq
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-22
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.