| Literature DB >> 19079747 |
Sanjeeva J Wijeyesakere, Faik A Nasser, Jeff W Kampf, Alexey Y Aksinenko, Vladimir B Sokolov, Vladimir V Malygin, Galina F Makhaeva, Rudy J Richardson.
Abstract
The title compound, C(13)H(16)F(6)NO(5)PS, is of inter-est with respect to inhibition of serine hydro-lases. Its structure contains a 1.8797 (13) Å P-C bond and two inter-molecular N-H⋯O=P hydrogen bonds, resulting in centrosymmetric dimers. An intra-molecular N-H⋯O=P hydrogen bond is also present.Entities:
Year: 2008 PMID: 19079747 PMCID: PMC2600860 DOI: 10.1107/S1600536808020175
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H16F6NO5PS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 6567 reflections |
| θ = 2.9–28.3º | |
| µ = 0.35 mm−1 | |
| β = 93.264 (2)º | Plate, colourless |
| 0.60 × 0.42 × 0.40 mm | |
| Bruker SMART CCD area-detector diffractometer | 4568 independent reflections |
| Radiation source: fine-focus sealed tube | 4027 reflections with |
| Monochromator: graphite | |
| θmax = 28.3º | |
| φ and ω scans | θmin = 2.9º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 2003) | |
| 20001 measured reflections |
| Refinement on | H-atom parameters constrained |
| Least-squares matrix: full | |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.34 e Å−3 | |
| Δρmin = −0.33 e Å−3 | |
| 4568 reflections | Extinction correction: none |
| 246 parameters |
| Experimental. 2103 frames × 20 sec @ 4.980 cm; 0.3 ° scans in ω & φ |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| P1 | 0.64284 (3) | 0.17485 (3) | 0.04487 (2) | 0.02726 (9) | |
| S1 | 0.33796 (3) | 0.15018 (3) | 0.174771 (18) | 0.02622 (8) | |
| N1 | 0.46059 (9) | 0.12554 (10) | 0.13045 (6) | 0.0247 (2) | |
| H1A | 0.4569 | 0.0699 | 0.0870 | 0.030* | |
| F1 | 0.73735 (8) | 0.14398 (10) | 0.24829 (6) | 0.0445 (2) | |
| F2 | 0.66649 (8) | −0.02537 (9) | 0.17986 (5) | 0.0429 (2) | |
| F3 | 0.57711 (8) | 0.05961 (9) | 0.28299 (5) | 0.0412 (2) | |
| F4 | 0.56725 (9) | 0.33003 (9) | 0.27115 (5) | 0.0434 (2) | |
| F5 | 0.67125 (8) | 0.38612 (9) | 0.16867 (6) | 0.0415 (2) | |
| F6 | 0.48768 (7) | 0.39288 (8) | 0.14967 (5) | 0.03547 (19) | |
| C1 | 0.26341 (11) | 0.26504 (13) | 0.10763 (7) | 0.0255 (2) | |
| C2 | 0.24216 (12) | 0.23293 (14) | 0.02114 (8) | 0.0307 (3) | |
| H2A | 0.2676 | 0.1513 | −0.0009 | 0.037* | |
| C3 | 0.18337 (14) | 0.32241 (16) | −0.03191 (9) | 0.0398 (3) | |
| H3A | 0.1682 | 0.3022 | −0.0909 | 0.048* | |
| C4 | 0.14648 (15) | 0.44131 (17) | 0.00055 (9) | 0.0435 (4) | |
| H4A | 0.1074 | 0.5028 | −0.0366 | 0.052* | |
| C5 | 0.16614 (14) | 0.47135 (16) | 0.08707 (9) | 0.0402 (3) | |
| H5A | 0.1391 | 0.5522 | 0.1091 | 0.048* | |
| C6 | 0.22553 (12) | 0.38277 (14) | 0.14136 (8) | 0.0313 (3) | |
| H6A | 0.2399 | 0.4026 | 0.2005 | 0.038* | |
| C7 | 0.57400 (11) | 0.18007 (12) | 0.15084 (8) | 0.0258 (2) | |
| C8 | 0.57452 (12) | 0.32405 (14) | 0.18606 (9) | 0.0326 (3) | |
| C9 | 0.63978 (13) | 0.08914 (14) | 0.21698 (9) | 0.0342 (3) | |
| C10 | 0.86488 (14) | 0.16185 (18) | 0.02046 (12) | 0.0464 (4) | |
| H10A | 0.8876 | 0.2351 | −0.0170 | 0.056* | |
| H10B | 0.8423 | 0.0853 | −0.0161 | 0.056* | |
| C11 | 0.96179 (17) | 0.1256 (3) | 0.08278 (18) | 0.0793 (7) | |
| H11A | 0.9820 | 0.2017 | 0.1194 | 0.119* | |
| H11B | 1.0283 | 0.0995 | 0.0512 | 0.119* | |
| H11C | 0.9386 | 0.0519 | 0.1186 | 0.119* | |
| C12 | 0.50917 (13) | 0.29279 (16) | −0.07438 (9) | 0.0367 (3) | |
| H12A | 0.4590 | 0.3713 | −0.0728 | 0.044* | |
| H12B | 0.4613 | 0.2134 | −0.0674 | 0.044* | |
| C13 | 0.56368 (16) | 0.28690 (17) | −0.15912 (10) | 0.0455 (4) | |
| H13A | 0.6155 | 0.3622 | −0.1640 | 0.068* | |
| H13B | 0.5040 | 0.2901 | −0.2058 | 0.068* | |
| H13C | 0.6071 | 0.2046 | −0.1628 | 0.068* | |
| O1 | 0.27788 (9) | 0.02744 (10) | 0.16554 (6) | 0.0339 (2) | |
| O2 | 0.36007 (9) | 0.20787 (10) | 0.25771 (5) | 0.0346 (2) | |
| O3 | 0.61539 (8) | 0.04887 (9) | 0.00278 (6) | 0.0311 (2) | |
| O4 | 0.77052 (9) | 0.20205 (12) | 0.07141 (7) | 0.0435 (3) | |
| O5 | 0.59785 (9) | 0.29985 (10) | −0.00394 (6) | 0.0348 (2) |
| P1 | 0.02908 (17) | 0.02691 (17) | 0.02539 (16) | 0.00270 (12) | −0.00198 (12) | −0.00504 (12) |
| S1 | 0.03576 (17) | 0.02732 (16) | 0.01571 (13) | 0.00577 (12) | 0.00261 (11) | 0.00207 (10) |
| N1 | 0.0305 (5) | 0.0241 (5) | 0.0192 (4) | 0.0051 (4) | −0.0018 (4) | −0.0048 (4) |
| F1 | 0.0422 (5) | 0.0527 (5) | 0.0364 (4) | 0.0091 (4) | −0.0185 (4) | −0.0058 (4) |
| F2 | 0.0575 (5) | 0.0330 (4) | 0.0363 (4) | 0.0205 (4) | −0.0127 (4) | −0.0031 (3) |
| F3 | 0.0557 (5) | 0.0430 (5) | 0.0236 (4) | 0.0084 (4) | −0.0093 (4) | 0.0041 (3) |
| F4 | 0.0591 (6) | 0.0422 (5) | 0.0277 (4) | 0.0078 (4) | −0.0074 (4) | −0.0163 (3) |
| F5 | 0.0415 (5) | 0.0342 (5) | 0.0479 (5) | −0.0042 (4) | −0.0065 (4) | −0.0146 (4) |
| F6 | 0.0423 (4) | 0.0229 (4) | 0.0404 (4) | 0.0082 (3) | −0.0050 (3) | −0.0057 (3) |
| C1 | 0.0292 (6) | 0.0292 (6) | 0.0181 (5) | 0.0059 (5) | 0.0025 (4) | 0.0009 (4) |
| C2 | 0.0388 (7) | 0.0329 (7) | 0.0202 (5) | 0.0110 (5) | 0.0005 (5) | −0.0027 (5) |
| C3 | 0.0523 (9) | 0.0449 (8) | 0.0215 (6) | 0.0175 (7) | −0.0052 (6) | −0.0026 (5) |
| C4 | 0.0550 (9) | 0.0439 (8) | 0.0304 (7) | 0.0243 (7) | −0.0075 (6) | 0.0003 (6) |
| C5 | 0.0500 (8) | 0.0379 (8) | 0.0320 (7) | 0.0214 (7) | −0.0022 (6) | −0.0062 (6) |
| C6 | 0.0371 (7) | 0.0346 (7) | 0.0222 (5) | 0.0100 (5) | 0.0012 (5) | −0.0042 (5) |
| C7 | 0.0319 (6) | 0.0237 (6) | 0.0210 (5) | 0.0065 (5) | −0.0062 (4) | −0.0044 (4) |
| C8 | 0.0386 (7) | 0.0287 (6) | 0.0294 (6) | 0.0053 (5) | −0.0067 (5) | −0.0091 (5) |
| C9 | 0.0412 (7) | 0.0339 (7) | 0.0261 (6) | 0.0100 (6) | −0.0105 (5) | −0.0032 (5) |
| C10 | 0.0367 (8) | 0.0492 (9) | 0.0545 (10) | −0.0068 (7) | 0.0128 (7) | −0.0050 (7) |
| C11 | 0.0352 (9) | 0.110 (2) | 0.0913 (17) | 0.0118 (11) | −0.0041 (10) | −0.0132 (15) |
| C12 | 0.0365 (7) | 0.0387 (8) | 0.0345 (7) | 0.0026 (6) | −0.0009 (5) | 0.0107 (6) |
| C13 | 0.0660 (11) | 0.0390 (8) | 0.0318 (7) | 0.0067 (7) | 0.0048 (7) | 0.0056 (6) |
| O1 | 0.0433 (5) | 0.0309 (5) | 0.0280 (4) | −0.0005 (4) | 0.0077 (4) | 0.0054 (4) |
| O2 | 0.0497 (6) | 0.0391 (5) | 0.0150 (4) | 0.0111 (4) | 0.0014 (4) | −0.0011 (4) |
| O3 | 0.0386 (5) | 0.0286 (5) | 0.0259 (4) | 0.0044 (4) | 0.0006 (4) | −0.0070 (4) |
| O4 | 0.0289 (5) | 0.0543 (7) | 0.0466 (6) | 0.0028 (5) | −0.0028 (4) | −0.0166 (5) |
| O5 | 0.0443 (6) | 0.0288 (5) | 0.0308 (5) | −0.0027 (4) | −0.0012 (4) | 0.0026 (4) |
| P1—O3 | 1.4632 (10) | C4—C5 | 1.390 (2) |
| P1—O4 | 1.5509 (11) | C4—H4A | 0.9500 |
| P1—O5 | 1.5545 (10) | C5—C6 | 1.3923 (19) |
| P1—C7 | 1.8797 (13) | C5—H5A | 0.9500 |
| S1—O2 | 1.4296 (9) | C6—H6A | 0.9500 |
| S1—O1 | 1.4321 (11) | C7—C9 | 1.5539 (17) |
| S1—N1 | 1.6458 (11) | C7—C8 | 1.5594 (17) |
| S1—C1 | 1.7629 (12) | C10—O4 | 1.4540 (19) |
| N1—C7 | 1.4549 (16) | C10—C11 | 1.496 (3) |
| N1—H1A | 0.8800 | C10—H10A | 0.9900 |
| F1—C9 | 1.3361 (17) | C10—H10B | 0.9900 |
| F2—C9 | 1.3419 (16) | C11—H11A | 0.9800 |
| F3—C9 | 1.3313 (18) | C11—H11B | 0.9800 |
| F4—C8 | 1.3359 (16) | C11—H11C | 0.9800 |
| F5—C8 | 1.3354 (18) | C12—O5 | 1.4687 (17) |
| F6—C8 | 1.3320 (16) | C12—C13 | 1.501 (2) |
| C1—C6 | 1.3870 (18) | C12—H12A | 0.9900 |
| C1—C2 | 1.3960 (16) | C12—H12B | 0.9900 |
| C2—C3 | 1.3838 (18) | C13—H13A | 0.9800 |
| C2—H2A | 0.9500 | C13—H13B | 0.9800 |
| C3—C4 | 1.386 (2) | C13—H13C | 0.9800 |
| C3—H3A | 0.9500 | ||
| O3—P1—O4 | 117.26 (6) | F6—C8—F5 | 107.48 (12) |
| O3—P1—O5 | 115.62 (6) | F6—C8—F4 | 108.02 (11) |
| O4—P1—O5 | 106.23 (6) | F5—C8—F4 | 106.43 (11) |
| O3—P1—C7 | 108.97 (6) | F6—C8—C7 | 110.65 (10) |
| O4—P1—C7 | 102.36 (6) | F5—C8—C7 | 110.84 (11) |
| O5—P1—C7 | 104.94 (6) | F4—C8—C7 | 113.15 (11) |
| O2—S1—O1 | 120.58 (6) | F3—C9—F1 | 107.88 (11) |
| O2—S1—N1 | 108.97 (6) | F3—C9—F2 | 106.91 (12) |
| O1—S1—N1 | 105.06 (6) | F1—C9—F2 | 107.63 (12) |
| O2—S1—C1 | 108.97 (6) | F3—C9—C7 | 111.92 (11) |
| O1—S1—C1 | 106.92 (6) | F1—C9—C7 | 112.07 (12) |
| N1—S1—C1 | 105.30 (5) | F2—C9—C7 | 110.20 (10) |
| C7—N1—S1 | 130.95 (8) | O4—C10—C11 | 106.50 (16) |
| C7—N1—H1A | 114.5 | O4—C10—H10A | 110.4 |
| S1—N1—H1A | 114.5 | C11—C10—H10A | 110.4 |
| C6—C1—C2 | 121.60 (11) | O4—C10—H10B | 110.4 |
| C6—C1—S1 | 120.05 (9) | C11—C10—H10B | 110.4 |
| C2—C1—S1 | 118.34 (10) | H10A—C10—H10B | 108.6 |
| C3—C2—C1 | 118.67 (12) | C10—C11—H11A | 109.5 |
| C3—C2—H2A | 120.7 | C10—C11—H11B | 109.5 |
| C1—C2—H2A | 120.7 | H11A—C11—H11B | 109.5 |
| C2—C3—C4 | 120.41 (13) | C10—C11—H11C | 109.5 |
| C2—C3—H3A | 119.8 | H11A—C11—H11C | 109.5 |
| C4—C3—H3A | 119.8 | H11B—C11—H11C | 109.5 |
| C3—C4—C5 | 120.51 (13) | O5—C12—C13 | 110.09 (13) |
| C3—C4—H4A | 119.7 | O5—C12—H12A | 109.6 |
| C5—C4—H4A | 119.7 | C13—C12—H12A | 109.6 |
| C4—C5—C6 | 119.89 (13) | O5—C12—H12B | 109.6 |
| C4—C5—H5A | 120.1 | C13—C12—H12B | 109.6 |
| C6—C5—H5A | 120.1 | H12A—C12—H12B | 108.2 |
| C1—C6—C5 | 118.90 (12) | C12—C13—H13A | 109.5 |
| C1—C6—H6A | 120.5 | C12—C13—H13B | 109.5 |
| C5—C6—H6A | 120.5 | H13A—C13—H13B | 109.5 |
| N1—C7—C9 | 109.28 (11) | C12—C13—H13C | 109.5 |
| N1—C7—C8 | 114.70 (10) | H13A—C13—H13C | 109.5 |
| C9—C7—C8 | 109.24 (10) | H13B—C13—H13C | 109.5 |
| N1—C7—P1 | 103.16 (8) | C10—O4—P1 | 123.57 (10) |
| C9—C7—P1 | 110.27 (9) | C12—O5—P1 | 122.10 (9) |
| C8—C7—P1 | 110.04 (9) |
| H··· | ||||
| N1—H1A···O3 | 0.88 | 2.34 | 2.8730 (14) | 119 |
| N1—H1A···O3i | 0.88 | 2.00 | 2.8324 (14) | 158 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.88 | 2.34 | 2.8730 (14) | 119 |
| N1—H1 | 0.88 | 2.00 | 2.8324 (14) | 158 |
Symmetry code: (i) .