Literature DB >> 21582219

Dimethyl [hydr-oxy(2-nitro-phen-yl)meth-yl]phospho-nate.

M Nawaz Tahir, Nurcan Acar, Hamza Yilmaz, Muhammad Ilyas Tariq, Dinçer Ulkü.   

Abstract

In the title compound, C(9)H(12)NO(6)P, intra-molecular C-H⋯O hydrogen bonds form five- and six-membered rings. In the crystal, inversion dimers lined by pairs of C-H⋯O hydrogen bonds occur with ring motifs R(2) (2)(10). The O atom of the hydr-oxy group behaves as an accepter and the benzene ring as donor. Adjacent dimers are connected through O-H⋯O links.

Entities:  

Year:  2009        PMID: 21582219      PMCID: PMC2968685          DOI: 10.1107/S1600536809005467

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Acar et al. (2009 ▶); Tahir et al. (2007 ▶); Chen et al. (2008 ▶); Maliha et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C9H12NO6P M = 261.17 Monoclinic, a = 9.8685 (12) Å b = 7.5081 (11) Å c = 16.1052 (12) Å β = 90.341 (1)° V = 1193.3 (2) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 296 K 0.26 × 0.20 × 0.18 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (MolEN; Fair, 1990 ▶) T min = 0.939, T max = 0.959 2222 measured reflections 2093 independent reflections 1873 reflections with I > 2σ(I) R int = 0.017 3 standard reflections frequency: 120 min intensity decay: −1.6%

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.231 S = 1.00 2093 reflections 162 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.70 e Å−3 Δρmin = −0.50 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1992 ▶); cell refinement: CAD-4 EXPRESS; data reduction: MolEN (Fair, 1990 ▶); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809005467/at2724sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809005467/at2724Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H12NO6PF(000) = 544
Mr = 261.17Dx = 1.454 Mg m3
Monoclinic, P21/cMelting point: 383 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 9.8685 (12) ÅCell parameters from 25 reflections
b = 7.5081 (11) Åθ = 11.7–21.0°
c = 16.1052 (12) ŵ = 0.25 mm1
β = 90.341 (1)°T = 296 K
V = 1193.3 (2) Å3Prismatic, brown
Z = 40.26 × 0.20 × 0.18 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.017
ω/2θ scansθmax = 25.0°, θmin = 2.5°
Absorption correction: ψ scan (MolEN; Fair, 1990)h = −11→0
Tmin = 0.939, Tmax = 0.959k = −8→0
2222 measured reflectionsl = −19→19
2093 independent reflections3 standard reflections every 120 min
1873 reflections with I > 2σ(I) intensity decay: −1.6%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.231w = 1/[σ2(Fo2) + (0.199P)2 + 0.3221P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2093 reflectionsΔρmax = 0.70 e Å3
162 parametersΔρmin = −0.50 e Å3
0 restraints
Experimental. the structure was solved by Patterson method using SHELX86 (Sheldrick, 2008); the whole molecule was recognized
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
xyzUiso*/Ueq
P10.11199 (7)0.14188 (9)0.16915 (4)0.0429 (3)
O10.0588 (2)0.4641 (3)0.12234 (12)0.0541 (7)
O20.4424 (3)0.3284 (5)0.20368 (16)0.0854 (12)
O30.5644 (3)0.1418 (5)0.1375 (2)0.0989 (14)
O40.0391 (2)0.1450 (3)0.24822 (14)0.0574 (8)
O50.0264 (2)0.0741 (3)0.09399 (13)0.0590 (8)
O60.2419 (2)0.0229 (3)0.16653 (17)0.0679 (9)
N10.4732 (2)0.2487 (4)0.14047 (16)0.0590 (9)
C10.2651 (3)0.3507 (3)0.06417 (15)0.0380 (8)
C20.3983 (3)0.2905 (4)0.06340 (16)0.0449 (8)
C30.4703 (3)0.2673 (5)−0.0095 (2)0.0580 (10)
C40.4101 (4)0.3092 (5)−0.08461 (19)0.0639 (11)
C50.2801 (3)0.3732 (5)−0.08579 (19)0.0590 (11)
C60.2083 (3)0.3926 (4)−0.01258 (16)0.0485 (9)
C70.1759 (3)0.3618 (3)0.14019 (16)0.0394 (8)
C8−0.1193 (4)0.0865 (7)0.0912 (3)0.0860 (16)
C90.2422 (4)−0.1632 (5)0.1836 (3)0.0822 (14)
H10.031 (4)0.514 (5)0.168 (2)0.0650*
H30.558500.22381−0.007870.0697*
H40.457320.29422−0.133920.0768*
H50.239570.40382−0.136090.0710*
H60.119790.43474−0.014890.0582*
H70.220 (3)0.409 (4)0.186 (2)0.0472*
H8A−0.152770.025780.042760.1289*
H8B−0.145670.209440.088890.1289*
H8C−0.156500.032370.140010.1289*
H9A0.33363−0.202630.192800.1231*
H9B0.20387−0.226320.137270.1231*
H9C0.18939−0.186180.232330.1231*
U11U22U33U12U13U23
P10.0397 (5)0.0498 (6)0.0394 (6)−0.0010 (3)0.0118 (3)0.0050 (2)
O10.0612 (13)0.0632 (12)0.0381 (11)0.0208 (10)0.0100 (9)−0.0029 (8)
O20.0730 (17)0.135 (3)0.0482 (14)0.0101 (15)−0.0100 (12)−0.0049 (14)
O30.0687 (19)0.134 (3)0.094 (2)0.0365 (17)−0.0079 (17)0.0130 (18)
O40.0558 (13)0.0733 (14)0.0432 (12)−0.0081 (10)0.0176 (10)0.0110 (9)
O50.0521 (13)0.0700 (14)0.0551 (13)−0.0075 (10)0.0116 (9)−0.0146 (10)
O60.0453 (12)0.0551 (13)0.1034 (19)0.0036 (9)0.0211 (11)0.0248 (12)
N10.0437 (13)0.0792 (18)0.0541 (15)−0.0038 (12)0.0011 (11)0.0101 (13)
C10.0422 (14)0.0397 (13)0.0322 (13)−0.0045 (9)0.0082 (10)0.0001 (8)
C20.0403 (13)0.0502 (14)0.0443 (14)−0.0063 (11)0.0059 (10)0.0011 (11)
C30.0421 (15)0.073 (2)0.0590 (17)−0.0008 (13)0.0181 (13)−0.0008 (14)
C40.0621 (19)0.086 (2)0.0439 (16)−0.0039 (17)0.0213 (13)−0.0057 (15)
C50.065 (2)0.080 (2)0.0322 (14)−0.0026 (15)0.0077 (12)0.0027 (12)
C60.0500 (16)0.0613 (16)0.0341 (14)0.0044 (12)0.0052 (11)0.0036 (11)
C70.0442 (14)0.0449 (14)0.0291 (13)0.0009 (10)0.0065 (10)0.0001 (9)
C80.056 (2)0.114 (3)0.088 (3)−0.004 (2)−0.0030 (18)−0.033 (2)
C90.068 (2)0.060 (2)0.119 (3)0.0109 (16)0.025 (2)0.025 (2)
P1—O41.467 (2)C3—C41.381 (5)
P1—O51.557 (2)C4—C51.370 (5)
P1—O61.563 (2)C5—C61.387 (4)
P1—C71.829 (2)C3—H30.9300
O1—C71.416 (3)C4—H40.9300
O2—N11.221 (4)C5—H50.9300
O3—N11.207 (4)C6—H60.9300
O5—C81.441 (4)C7—H70.93 (3)
O6—C91.424 (4)C8—H8A0.9600
O1—H10.87 (3)C8—H8B0.9600
N1—C21.475 (4)C8—H8C0.9600
C1—C61.390 (4)C9—H9A0.9600
C1—C71.515 (4)C9—H9B0.9600
C1—C21.390 (4)C9—H9C0.9600
C2—C31.387 (4)
P1···H1i3.14 (3)N1···O62.876 (3)
O1···O43.145 (3)N1···H72.87 (3)
O1···O52.981 (3)C2···O63.035 (4)
O1···C83.372 (5)C2···C4ix3.566 (5)
O1···O4ii2.674 (3)C3···C3ix3.556 (5)
O1···C6iii3.343 (4)C4···C2ix3.566 (5)
O2···C72.827 (4)C6···O1iii3.343 (4)
O2···O63.086 (4)C7···O22.827 (4)
O3···C8iv3.240 (5)C8···O13.372 (5)
O4···O13.145 (3)C8···O3x3.240 (5)
O4···O1i2.674 (3)C8···O5v3.350 (5)
O4···C9ii3.320 (5)C9···O4i3.320 (5)
O5···C8v3.350 (5)H1···P1ii3.14 (3)
O5···O12.981 (3)H1···O4ii1.81 (3)
O6···O23.086 (4)H3···O32.4200
O6···C23.035 (4)H4···H9Axi2.3800
O6···N12.876 (3)H4···O2xii2.7800
O1···H6iii2.5800H5···O4xii2.7300
O1···H62.3000H6···O12.3000
O1···H8B2.8300H6···O1iii2.5800
O1···H9Bvi2.7400H7···O22.29 (3)
O2···H72.29 (3)H7···N12.87 (3)
O2···H9Avii2.7700H8A···O5v2.6500
O2···H4viii2.7800H8B···O12.8300
O3···H32.4200H8C···O3x2.8700
O3···H8Civ2.8700H8C···O42.7300
O4···H5viii2.7300H9A···O2xiii2.7700
O4···H9C2.9100H9A···H4xi2.3800
O4···H9Cii2.6100H9B···O1xiv2.7400
O4···H8C2.7300H9C···O42.9100
O4···H1i1.81 (3)H9C···O4i2.6100
O5···H8Av2.6500
O4—P1—O5114.43 (12)P1—C7—O1105.03 (19)
O4—P1—O6116.05 (14)C2—C3—H3120.00
O4—P1—C7112.25 (13)C4—C3—H3120.00
O5—P1—O6103.49 (13)C3—C4—H4120.00
O5—P1—C7106.44 (12)C5—C4—H4120.00
O6—P1—C7103.00 (13)C4—C5—H5120.00
P1—O5—C8122.7 (2)C6—C5—H5120.00
P1—O6—C9123.8 (2)C1—C6—H6119.00
C7—O1—H1109 (2)C5—C6—H6119.00
O2—N1—O3123.3 (3)P1—C7—H7107.7 (19)
O3—N1—C2118.6 (3)O1—C7—H7109.5 (18)
O2—N1—C2118.1 (3)C1—C7—H7113.1 (19)
C2—C1—C7125.4 (2)O5—C8—H8A109.00
C6—C1—C7118.2 (3)O5—C8—H8B109.00
C2—C1—C6116.2 (2)O5—C8—H8C109.00
N1—C2—C3115.4 (3)H8A—C8—H8B109.00
C1—C2—C3122.5 (3)H8A—C8—H8C109.00
N1—C2—C1122.1 (2)H8B—C8—H8C110.00
C2—C3—C4119.5 (3)O6—C9—H9A109.00
C3—C4—C5119.3 (3)O6—C9—H9B110.00
C4—C5—C6120.5 (3)O6—C9—H9C109.00
C1—C6—C5121.8 (3)H9A—C9—H9B109.00
P1—C7—C1111.07 (16)H9A—C9—H9C109.00
O1—C7—C1110.1 (2)H9B—C9—H9C109.00
O4—P1—O5—C825.6 (3)C6—C1—C2—N1177.3 (3)
O6—P1—O5—C8152.8 (3)C6—C1—C2—C3−2.1 (4)
C7—P1—O5—C8−99.0 (3)C7—C1—C2—N1−7.1 (4)
O4—P1—O6—C958.0 (3)C7—C1—C2—C3173.6 (3)
O5—P1—O6—C9−68.2 (3)C2—C1—C6—C50.8 (4)
C7—P1—O6—C9−179.0 (3)C7—C1—C6—C5−175.2 (3)
O4—P1—C7—O1−68.02 (19)C2—C1—C7—P1−76.9 (3)
O4—P1—C7—C1173.00 (18)C2—C1—C7—O1167.2 (2)
O5—P1—C7—O157.90 (19)C6—C1—C7—P198.6 (2)
O5—P1—C7—C1−61.1 (2)C6—C1—C7—O1−17.3 (3)
O6—P1—C7—O1166.43 (17)N1—C2—C3—C4−177.7 (3)
O6—P1—C7—C147.5 (2)C1—C2—C3—C41.7 (5)
O2—N1—C2—C1−28.4 (4)C2—C3—C4—C50.1 (5)
O2—N1—C2—C3151.0 (3)C3—C4—C5—C6−1.3 (6)
O3—N1—C2—C1153.8 (3)C4—C5—C6—C10.9 (5)
O3—N1—C2—C3−26.8 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···O4ii0.87 (3)1.81 (3)2.674 (3)171 (4)
C6—H6···O10.93002.30002.688 (3)104.00
C6—H6···O1iii0.93002.58003.343 (4)140.00
C7—H7···O20.93 (3)2.29 (3)2.827 (4)116 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O4i0.87 (3)1.81 (3)2.674 (3)171 (4)
C6—H6⋯O10.932.302.688 (3)104
C6—H6⋯O1ii0.932.583.343 (4)140
C7—H7⋯O20.93 (3)2.29 (3)2.827 (4)116 (2)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diethyl [hydr-oxy(2-nitro-phen-yl)-meth-yl]phospho-nate.

Authors:  Cai-Bao Chen; Wei-Wei Jin; Xin-Yong Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

3.  3-[(Methyl-carbamo-yl)amino]-1H-isoindolium chloride.

Authors:  Bushra Maliha; Muhammad Ilyas Tariq; M Nawaz Tahir; Ishtiaq Hussain; Hamid Latif Siddiqui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-04

4.  Dimethyl (1-hydr-oxy-1,2-diphenyl-ethyl)phospho-nate.

Authors:  Nurcan Acar; M Nawaz Tahir; Hamza Yılmaz; Muhammad Saeed Ahmad Chishti; Muhammad Ali Malik
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-06

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  4 in total

1.  Dimethyl (2-hydr-oxy-4-phenyl-but-3-en-2-yl)phospho-nate.

Authors:  M Nawaz Tahir; Nurcan Acar; Hamza Yilmaz; Riaz H Tariq
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

2.  Dimethyl (1-hydr-oxy-1,2-diphenyl-ethyl)phospho-nate.

Authors:  M Nawaz Tahir; Nurcan Acar; Hamza Yilmaz; Riaz H Tariq
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-31

3.  Diethyl (1-hydr-oxy-1,2-diphenyl-ethyl)phospho-nate.

Authors:  Nurcan Acar; M Nawaz Tahir; Riaz H Tariq; Hamza Yilmaz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-07

4.  Diethyl (1-hydr-oxy-1-phenyl-ethyl)phospho-nate.

Authors:  M Nawaz Tahir; Nurcan Acar; Hamza Yilmaz; Muhammad Ilyas Tariq; Ghulam Hussain
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31
  4 in total

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