Literature DB >> 21754115

4-[(Dieth-oxy-phosphino-yl)meth-yl]benzoic acid.

S Karthikeyan, K Sethusankar, Ganesan Gobi Rajeshwaran, Arasambattu K Mohanakrishnan.   

Abstract

In the title compound, C(12)H(17)N(2)O(5)P, the phospho-nate group is almost orthogonal to both the ethyl groups, with a dihedral angle of 83.75 (11)°. In the crystal, mol-ecules are linked into centrosymmetric dimers via pairs of O-H⋯O hydrogen bonds with an R(2) (2)(20) graph-set motif. The crystal structure is further consolidated by weak C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 21754115      PMCID: PMC3099904          DOI: 10.1107/S1600536811008282

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of phospho­nate derivatives, see: Hirschmann et al. (1994 ▶). For related structures, see: An et al. (2008 ▶); Chen et al. (2008 ▶). For graph-set motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H17O5P M = 272.23 Monoclinic, a = 9.6505 (5) Å b = 12.1706 (6) Å c = 11.8156 (6) Å β = 108.926 (2)° V = 1312.74 (12) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 293 K 0.23 × 0.20 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer 13181 measured reflections 2960 independent reflections 2441 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.106 S = 1.04 2960 reflections 165 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2008) ▶; cell refinement: SAINT (Bruker, 2008) ▶; data reduction: SAINT ▶; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97, PARST (Nardelli, 1983 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811008282/pv2396sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008282/pv2396Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H17O5PF(000) = 576
Mr = 272.23Dx = 1.377 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2960 reflections
a = 9.6505 (5) Åθ = 1.0–25.0°
b = 12.1706 (6) ŵ = 0.22 mm1
c = 11.8156 (6) ÅT = 293 K
β = 108.926 (2)°Block, colourless
V = 1312.74 (12) Å30.23 × 0.20 × 0.20 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer2441 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.025
graphiteθmax = 27.3°, θmin = 2.4°
ω scansh = −12→12
13181 measured reflectionsk = −15→15
2960 independent reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0578P)2 + 0.272P] where P = (Fo2 + 2Fc2)/3
2960 reflections(Δ/σ)max = 0.001
165 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.56048 (16)−0.02314 (13)0.81418 (13)0.0410 (3)
C20.40996 (15)0.00742 (12)0.81102 (12)0.0367 (3)
C30.34611 (17)0.10233 (13)0.75114 (14)0.0430 (3)
H30.39500.14330.70940.052*
C40.21059 (18)0.13606 (14)0.75341 (14)0.0451 (4)
H40.16910.20000.71350.054*
C50.13554 (16)0.07576 (13)0.81447 (13)0.0409 (3)
C60.19754 (18)−0.02041 (14)0.87045 (14)0.0457 (4)
H60.1467−0.06320.90900.055*
C70.33374 (18)−0.05359 (13)0.86979 (13)0.0426 (3)
H70.3748−0.11770.90930.051*
C8−0.00843 (17)0.11637 (15)0.82358 (14)0.0485 (4)
H8A−0.06780.05400.83040.058*
H8B−0.06110.15610.75120.058*
C9−0.24479 (18)0.29083 (16)0.86037 (16)0.0536 (4)
H9A−0.27110.24560.78890.064*
H9B−0.20590.35990.84280.064*
C10−0.3748 (2)0.31113 (17)0.89678 (18)0.0623 (5)
H10A−0.41470.24230.91100.094*
H10B−0.44700.35010.83440.094*
H10C−0.34730.35420.96870.094*
C110.1723 (2)0.38949 (16)0.99414 (17)0.0558 (4)
H11A0.17350.37211.07460.067*
H11B0.13140.46250.97400.067*
C120.3235 (2)0.38617 (19)0.98815 (19)0.0662 (5)
H12A0.36290.31351.00740.099*
H12B0.38370.43771.04430.099*
H12C0.32170.40510.90880.099*
O10.10809 (12)0.15721 (11)1.06524 (9)0.0519 (3)
O2−0.13529 (11)0.23494 (10)0.95801 (9)0.0451 (3)
O30.08356 (12)0.30987 (10)0.91015 (10)0.0502 (3)
O40.60874 (12)−0.11402 (10)0.87523 (10)0.0513 (3)
H4A0.6917−0.12750.87440.077*
O50.63179 (14)0.02983 (11)0.76684 (12)0.0608 (3)
P10.01894 (4)0.20435 (4)0.95001 (3)0.04038 (14)
U11U22U33U12U13U23
C10.0400 (8)0.0442 (8)0.0372 (7)0.0009 (6)0.0103 (6)−0.0061 (6)
C20.0377 (7)0.0394 (7)0.0319 (6)−0.0005 (6)0.0097 (5)−0.0043 (6)
C30.0455 (8)0.0437 (9)0.0428 (8)0.0007 (7)0.0183 (6)0.0053 (6)
C40.0467 (8)0.0460 (9)0.0420 (8)0.0080 (7)0.0134 (7)0.0067 (6)
C50.0366 (7)0.0496 (9)0.0349 (7)−0.0012 (6)0.0094 (6)−0.0066 (6)
C60.0476 (8)0.0478 (9)0.0462 (8)−0.0064 (7)0.0215 (7)0.0007 (7)
C70.0486 (8)0.0392 (8)0.0404 (8)0.0031 (6)0.0149 (6)0.0035 (6)
C80.0349 (8)0.0628 (11)0.0454 (8)−0.0007 (7)0.0096 (6)−0.0077 (7)
C90.0436 (9)0.0682 (12)0.0482 (9)0.0145 (8)0.0136 (7)0.0164 (8)
C100.0432 (9)0.0730 (13)0.0693 (12)0.0140 (9)0.0161 (8)0.0071 (10)
C110.0579 (10)0.0583 (11)0.0522 (9)−0.0065 (8)0.0193 (8)−0.0083 (8)
C120.0467 (10)0.0773 (14)0.0673 (12)−0.0097 (9)0.0083 (9)0.0114 (10)
O10.0407 (6)0.0720 (8)0.0398 (6)0.0129 (6)0.0088 (5)0.0073 (5)
O20.0365 (5)0.0608 (7)0.0389 (5)0.0101 (5)0.0136 (4)0.0100 (5)
O30.0453 (6)0.0648 (8)0.0390 (6)−0.0090 (5)0.0115 (5)0.0004 (5)
O40.0428 (6)0.0574 (7)0.0518 (6)0.0115 (5)0.0128 (5)0.0075 (5)
O50.0500 (7)0.0632 (8)0.0783 (9)0.0047 (6)0.0333 (6)0.0109 (7)
P10.0314 (2)0.0556 (3)0.0334 (2)0.00373 (16)0.00944 (15)0.00211 (16)
C1—O51.2049 (19)C9—C101.473 (2)
C1—O41.3201 (19)C9—H9A0.9700
C1—C21.488 (2)C9—H9B0.9700
C2—C71.381 (2)C10—H10A0.9600
C2—C31.390 (2)C10—H10B0.9600
C3—C41.379 (2)C10—H10C0.9600
C3—H30.9300C11—O31.451 (2)
C4—C51.387 (2)C11—C121.484 (3)
C4—H40.9300C11—H11A0.9700
C5—C61.382 (2)C11—H11B0.9700
C5—C81.511 (2)C12—H12A0.9600
C6—C71.377 (2)C12—H12B0.9600
C6—H60.9300C12—H12C0.9600
C7—H70.9300O1—P11.4708 (11)
C8—P11.7867 (16)O2—P11.5666 (11)
C8—H8A0.9700O3—P11.5654 (12)
C8—H8B0.9700O4—H4A0.8200
C9—O21.4558 (18)
O5—C1—O4123.27 (14)O2—C9—H9B110.0
O5—C1—C2123.67 (15)C10—C9—H9B110.0
O4—C1—C2113.06 (13)H9A—C9—H9B108.4
C7—C2—C3118.85 (14)C9—C10—H10A109.5
C7—C2—C1121.87 (14)C9—C10—H10B109.5
C3—C2—C1119.24 (13)H10A—C10—H10B109.5
C4—C3—C2120.27 (14)C9—C10—H10C109.5
C4—C3—H3119.9H10A—C10—H10C109.5
C2—C3—H3119.9H10B—C10—H10C109.5
C3—C4—C5120.74 (15)O3—C11—C12108.69 (15)
C3—C4—H4119.6O3—C11—H11A110.0
C5—C4—H4119.6C12—C11—H11A110.0
C6—C5—C4118.64 (14)O3—C11—H11B110.0
C6—C5—C8120.56 (15)C12—C11—H11B110.0
C4—C5—C8120.76 (15)H11A—C11—H11B108.3
C7—C6—C5120.77 (14)C11—C12—H12A109.5
C7—C6—H6119.6C11—C12—H12B109.5
C5—C6—H6119.6H12A—C12—H12B109.5
C6—C7—C2120.68 (14)C11—C12—H12C109.5
C6—C7—H7119.7H12A—C12—H12C109.5
C2—C7—H7119.7H12B—C12—H12C109.5
C5—C8—P1111.44 (10)C9—O2—P1121.53 (10)
C5—C8—H8A109.3C11—O3—P1123.12 (11)
P1—C8—H8A109.3C1—O4—H4A109.5
C5—C8—H8B109.3O1—P1—O3115.34 (7)
P1—C8—H8B109.3O1—P1—O2108.59 (6)
H8A—C8—H8B108.0O3—P1—O2107.59 (7)
O2—C9—C10108.36 (14)O1—P1—C8115.07 (8)
O2—C9—H9A110.0O3—P1—C8101.85 (8)
C10—C9—H9A110.0O2—P1—C8107.89 (7)
O5—C1—C2—C7−177.82 (15)C6—C5—C8—P189.85 (17)
O4—C1—C2—C71.6 (2)C4—C5—C8—P1−87.88 (16)
O5—C1—C2—C3−0.3 (2)C10—C9—O2—P1−178.09 (13)
O4—C1—C2—C3179.10 (13)C12—C11—O3—P1113.06 (15)
C7—C2—C3—C41.7 (2)C11—O3—P1—O1−31.60 (15)
C1—C2—C3—C4−175.88 (14)C11—O3—P1—O289.74 (13)
C2—C3—C4—C5−0.4 (2)C11—O3—P1—C8−156.94 (13)
C3—C4—C5—C6−1.7 (2)C9—O2—P1—O1175.49 (13)
C3—C4—C5—C8176.10 (14)C9—O2—P1—O350.02 (14)
C4—C5—C6—C72.6 (2)C9—O2—P1—C8−59.17 (15)
C8—C5—C6—C7−175.21 (14)C5—C8—P1—O1−54.31 (15)
C5—C6—C7—C2−1.4 (2)C5—C8—P1—O371.21 (13)
C3—C2—C7—C6−0.8 (2)C5—C8—P1—O2−175.70 (11)
C1—C2—C7—C6176.70 (13)
Cg1 is the centroid of the C2–C7 benzene ring.
D—H···AD—HH···AD···AD—H···A
O4—H4A···O1i0.821.872.644 (2)158
C12—H12C···Cg1ii0.962.973.853 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C7 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4A⋯O1i0.821.872.644 (2)158
C12—H12CCg1ii0.962.973.853 (2)153

Symmetry codes: (i) ; (ii) .

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3.  Peptide synthesis catalyzed by an antibody containing a binding site for variable amino acids.

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4.  Diethyl [hydr-oxy(phen-yl)meth-yl]phospho-nate.

Authors:  Li-Tao An; Gui-Xia Gong; Xing Liu; Min Xia; Jian-Feng Zhou
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5.  Structure validation in chemical crystallography.

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