Literature DB >> 21197652

Where gene discovery turns into systems biology: genome-scale RNAi screens in Drosophila.

Ralph A Neumüller1, Norbert Perrimon.   

Abstract

Systems biology aims to describe the complex interplays between cellular building blocks which, in their concurrence, give rise to the emergent properties observed in cellular behaviors and responses. This approach tries to determine the molecular players and the architectural principles of their interactions within the genetic networks that control certain biological processes. Large-scale loss-of-function screens, applicable in various different model systems, have begun to systematically interrogate entire genomes to identify the genes that contribute to a certain cellular response. In particular, RNA interference (RNAi)-based high-throughput screens have been instrumental in determining the composition of regulatory systems and paired with integrative data analyses have begun to delineate the genetic networks that control cell biological and developmental processes. Through the creation of tools for both, in vitro and in vivo genome-wide RNAi screens, Drosophila melanogaster has emerged as one of the key model organisms in systems biology research and over the last years has massively contributed to and hence shaped this discipline. WIREs Syst Biol Med 2011 3 471-478 DOI: 10.1002/wsbm.127
Copyright © 2010 John Wiley & Sons, Inc.

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Year:  2010        PMID: 21197652      PMCID: PMC3560415          DOI: 10.1002/wsbm.127

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  54 in total

1.  Genome-wide RNAi analysis of growth and viability in Drosophila cells.

Authors:  Michael Boutros; Amy A Kiger; Susan Armknecht; Kim Kerr; Marc Hild; Britta Koch; Stefan A Haas; Renato Paro; Norbert Perrimon
Journal:  Science       Date:  2004-02-06       Impact factor: 47.728

2.  Genome-scale RNAi profiling of cell division in human tissue culture cells.

Authors:  Ralf Kittler; Laurence Pelletier; Anne-Kristine Heninger; Mikolaj Slabicki; Mirko Theis; Lukasz Miroslaw; Ina Poser; Steffen Lawo; Hannes Grabner; Karol Kozak; Jan Wagner; Vineeth Surendranath; Constance Richter; Wayne Bowen; Aimee L Jackson; Bianca Habermann; Anthony A Hyman; Frank Buchholz
Journal:  Nat Cell Biol       Date:  2007-11-11       Impact factor: 28.824

3.  A Drosophila resource of transgenic RNAi lines for neurogenetics.

Authors:  Jian-Quan Ni; Lu-Ping Liu; Richard Binari; Robert Hardy; Hye-Seok Shim; Amanda Cavallaro; Matthew Booker; Barret D Pfeiffer; Michele Markstein; Hui Wang; Christians Villalta; Todd R Laverty; Lizabeth A Perkins; Norbert Perrimon
Journal:  Genetics       Date:  2009-06-01       Impact factor: 4.562

4.  Secretion of Wnt ligands requires Evi, a conserved transmembrane protein.

Authors:  Kerstin Bartscherer; Nadège Pelte; Dierk Ingelfinger; Michael Boutros
Journal:  Cell       Date:  2006-05-05       Impact factor: 41.582

Review 5.  Dividing cellular asymmetry: asymmetric cell division and its implications for stem cells and cancer.

Authors:  Ralph A Neumüller; Juergen A Knoblich
Journal:  Genes Dev       Date:  2009-12-01       Impact factor: 11.361

Review 6.  The RNA polymerase I transcription machinery: an emerging target for the treatment of cancer.

Authors:  Denis Drygin; William G Rice; Ingrid Grummt
Journal:  Annu Rev Pharmacol Toxicol       Date:  2010       Impact factor: 13.820

7.  SALS, a WH2-domain-containing protein, promotes sarcomeric actin filament elongation from pointed ends during Drosophila muscle growth.

Authors:  Jianwu Bai; John H Hartwig; Norbert Perrimon
Journal:  Dev Cell       Date:  2007-12       Impact factor: 12.270

8.  A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila.

Authors:  Georg Dietzl; Doris Chen; Frank Schnorrer; Kuan-Chung Su; Yulia Barinova; Michaela Fellner; Beate Gasser; Kaolin Kinsey; Silvia Oppel; Susanne Scheiblauer; Africa Couto; Vincent Marra; Krystyna Keleman; Barry J Dickson
Journal:  Nature       Date:  2007-07-12       Impact factor: 49.962

Review 9.  A Notch updated.

Authors:  An-Chi Tien; Akhila Rajan; Hugo J Bellen
Journal:  J Cell Biol       Date:  2009-03-02       Impact factor: 10.539

10.  Phosphorylation networks regulating JNK activity in diverse genetic backgrounds.

Authors:  Chris Bakal; Rune Linding; Flora Llense; Elleard Heffern; Enrique Martin-Blanco; Tony Pawson; Norbert Perrimon
Journal:  Science       Date:  2008-10-17       Impact factor: 47.728

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  5 in total

Review 1.  RNAi screening: new approaches, understandings, and organisms.

Authors:  Stephanie E Mohr; Norbert Perrimon
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-09-22       Impact factor: 9.957

Review 2.  RNAi screening in Drosophila cells and in vivo.

Authors:  Stephanie E Mohr
Journal:  Methods       Date:  2014-02-24       Impact factor: 3.608

Review 3.  Cell-based genomic screening: elucidating virus-host interactions.

Authors:  Debasis Panda; Sara Cherry
Journal:  Curr Opin Virol       Date:  2012-11-02       Impact factor: 7.090

Review 4.  The Drosophila visual system: From neural circuits to behavior.

Authors:  Yan Zhu
Journal:  Cell Adh Migr       Date:  2013-06-27       Impact factor: 3.405

5.  Dissection and Immunofluorescent Staining of Mushroom Body and Photoreceptor Neurons in Adult Drosophila melanogaster Brains.

Authors:  Seth M Kelly; Alexandra Elchert; Michael Kahl
Journal:  J Vis Exp       Date:  2017-11-06       Impact factor: 1.355

  5 in total

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