Literature DB >> 23122855

Cell-based genomic screening: elucidating virus-host interactions.

Debasis Panda1, Sara Cherry.   

Abstract

Viruses rely on host cell machinery for successful infection, while at the same time evading the host immune response. Characterization of these processes has revealed insights both into fundamental cellular processes as well as the nuances of viral replication. The recent advent of cell-based screening coupled with RNAi technology, has greatly facilitated studies focused on characterizing the virus-host interface and has expanded our understanding of cellular factors that impact viral infection. These findings have led to the discovery of potential therapeutic targets, but there is certainly more to be discovered. In this article we will review the recent progress in this arena and discuss the challenges and future of this emerging field.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 23122855      PMCID: PMC3512112          DOI: 10.1016/j.coviro.2012.10.007

Source DB:  PubMed          Journal:  Curr Opin Virol        ISSN: 1879-6257            Impact factor:   7.090


  74 in total

1.  Identification of cellular proteins required for replication of human immunodeficiency virus type 1.

Authors:  Natallia Dziuba; Monique R Ferguson; William A O'Brien; Anthony Sanchez; Andrew J Prussia; Natalie J McDonald; Brian M Friedrich; Guangyu Li; Michael W Shaw; Jinsong Sheng; Thomas W Hodge; Donald H Rubin; James L Murray
Journal:  AIDS Res Hum Retroviruses       Date:  2012-04-20       Impact factor: 2.205

Review 2.  A dynamic perspective of RNAi library development.

Authors:  Qiuwei Pan; Luc J W van der Laan; Harry L A Janssen; Maikel P Peppelenbosch
Journal:  Trends Biotechnol       Date:  2012-02-01       Impact factor: 19.536

3.  Design and implementation of high-throughput RNAi screens in cultured Drosophila cells.

Authors:  Nadire Ramadan; Ian Flockhart; Matthew Booker; Norbert Perrimon; Bernard Mathey-Prevot
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

4.  Rab9 GTPase is required for replication of human immunodeficiency virus type 1, filoviruses, and measles virus.

Authors:  James L Murray; Manos Mavrakis; Natalie J McDonald; Mamadi Yilla; Jinsong Sheng; William J Bellini; Lijun Zhao; Joseph M Le Doux; Michael W Shaw; Chi-Cheng Luo; Jennifer Lippincott-Schwartz; Anthony Sanchez; Donald H Rubin; Thomas W Hodge
Journal:  J Virol       Date:  2005-09       Impact factor: 5.103

5.  Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication.

Authors:  Alexander Karlas; Nikolaus Machuy; Yujin Shin; Klaus-Peter Pleissner; Anita Artarini; Dagmar Heuer; Daniel Becker; Hany Khalil; Lesley A Ogilvie; Simone Hess; André P Mäurer; Elke Müller; Thorsten Wolff; Thomas Rudel; Thomas F Meyer
Journal:  Nature       Date:  2010-01-17       Impact factor: 49.962

6.  Where gene discovery turns into systems biology: genome-scale RNAi screens in Drosophila.

Authors:  Ralph A Neumüller; Norbert Perrimon
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010-12-31

7.  siRNA screening of a targeted library of DNA repair factors in HIV infection reveals a role for base excision repair in HIV integration.

Authors:  Amy S Espeseth; Rick Fishel; Daria Hazuda; Qian Huang; Min Xu; Kristine Yoder; Honglin Zhou
Journal:  PLoS One       Date:  2011-03-23       Impact factor: 3.240

Review 8.  Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors:  Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

9.  COPI activity coupled with fatty acid biosynthesis is required for viral replication.

Authors:  Sara Cherry; Amit Kunte; Hui Wang; Carolyn Coyne; Robert B Rawson; Norbert Perrimon
Journal:  PLoS Pathog       Date:  2006-10       Impact factor: 6.823

10.  Discovery of insect and human dengue virus host factors.

Authors:  October M Sessions; Nicholas J Barrows; Jayme A Souza-Neto; Timothy J Robinson; Christine L Hershey; Mary A Rodgers; Jose L Ramirez; George Dimopoulos; Priscilla L Yang; James L Pearson; Mariano A Garcia-Blanco
Journal:  Nature       Date:  2009-04-23       Impact factor: 49.962

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  27 in total

1.  Growth-restricting effects of siRNA transfections: a largely deterministic combination of off-target binding and hybridization-independent competition.

Authors:  Neha Daga; Simone Eicher; Abhilash Kannan; Alain Casanova; Shyan H Low; Saskia Kreibich; Daniel Andritschke; Mario Emmenlauer; Jeremy L Jenkins; Wolf-Dietrich Hardt; Urs F Greber; Christoph Dehio; Christian von Mering
Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

2.  Probing the virus host interaction in high containment: an approach using pooled short hairpin RNA.

Authors:  Claire Marie Filone; Ken Dower; Glenn S Cowley; Lisa E Hensley; John H Connor
Journal:  Assay Drug Dev Technol       Date:  2015-02-03       Impact factor: 1.738

Review 3.  Viruses and antiviral immunity in Drosophila.

Authors:  Jie Xu; Sara Cherry
Journal:  Dev Comp Immunol       Date:  2013-05-13       Impact factor: 3.636

Review 4.  RNAi screening comes of age: improved techniques and complementary approaches.

Authors:  Stephanie E Mohr; Jennifer A Smith; Caroline E Shamu; Ralph A Neumüller; Norbert Perrimon
Journal:  Nat Rev Mol Cell Biol       Date:  2014-09       Impact factor: 94.444

5.  Genome-wide RNAi screen identifies SEC61A and VCP as conserved regulators of Sindbis virus entry.

Authors:  Debasis Panda; Patrick P Rose; Sheri L Hanna; Beth Gold; Kaycie C Hopkins; Randolph B Lyde; Michael S Marks; Sara Cherry
Journal:  Cell Rep       Date:  2013-12-12       Impact factor: 9.423

Review 6.  Viral sensing of the subcellular environment regulates the assembly of new viral replicase complexes during the course of infection.

Authors:  Peter D Nagy
Journal:  J Virol       Date:  2015-03-04       Impact factor: 5.103

7.  Genome-wide RNAi Screening to Identify Host Factors That Modulate Oncolytic Virus Therapy.

Authors:  Kristina J Allan; Douglas J Mahoney; Stephen D Baird; Charles A Lefebvre; David F Stojdl
Journal:  J Vis Exp       Date:  2018-04-03       Impact factor: 1.355

8.  Arbovirus Infections As Screening Tools for the Identification of Viral Immunomodulators and Host Antiviral Factors.

Authors:  Emily A Rex; Dahee Seo; Don B Gammon
Journal:  J Vis Exp       Date:  2018-09-13       Impact factor: 1.355

9.  RNASEK is required for internalization of diverse acid-dependent viruses.

Authors:  Brent A Hackett; Ari Yasunaga; Debasis Panda; Michael A Tartell; Kaycie C Hopkins; Scott E Hensley; Sara Cherry
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-08       Impact factor: 11.205

10.  Tetraspanin CD151 Promotes Initial Events in Human Cytomegalovirus Infection.

Authors:  Daniel Hochdorfer; Luise Florin; Christian Sinzger; Diana Lieber
Journal:  J Virol       Date:  2016-06-24       Impact factor: 5.103

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