Literature DB >> 21181254

Nuclear proteins: finding and binding target sites in chromatin.

Martin E van Royen1, Angelika Zotter, Shehu M Ibrahim, Bart Geverts, Adriaan B Houtsmuller.   

Abstract

Fluorescent protein labelling, as well as impressive progress in live cell imaging have revolutionised the view on how essential nuclear functions like gene transcription regulation and DNA repair are organised. Here, we address questions like how DNA-interacting molecules find and bind their target sequences in the vast amount of DNA. In addition, we discuss methods that have been developed for quantitative analysis of data from fluorescence recovery after photobleaching experiments (FRAP).

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Year:  2011        PMID: 21181254     DOI: 10.1007/s10577-010-9172-5

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  106 in total

1.  The glucocorticoid receptor: rapid exchange with regulatory sites in living cells.

Authors:  J G McNally; W G Müller; D Walker; R Wolford; G L Hager
Journal:  Science       Date:  2000-02-18       Impact factor: 47.728

2.  FRAP reveals that mobility of oestrogen receptor-alpha is ligand- and proteasome-dependent.

Authors:  D L Stenoien; K Patel; M G Mancini; M Dutertre; C L Smith; B W O'Malley; M A Mancini
Journal:  Nat Cell Biol       Date:  2001-01       Impact factor: 28.824

3.  Action of DNA repair endonuclease ERCC1/XPF in living cells.

Authors:  A B Houtsmuller; S Rademakers; A L Nigg; D Hoogstraten; J H Hoeijmakers; W Vermeulen
Journal:  Science       Date:  1999-05-07       Impact factor: 47.728

4.  DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters.

Authors:  Anje Sporbert; Anja Gahl; Richard Ankerhold; Heinrich Leonhardt; M Cristina Cardoso
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

5.  Physical constraints and functional characteristics of transcription factor-DNA interaction.

Authors:  Ulrich Gerland; J David Moroz; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-06       Impact factor: 11.205

6.  A 629RKLKK633 motif in the hinge region controls the androgen receptor at multiple levels.

Authors:  Tamzin M Tanner; Sarah Denayer; Bart Geverts; Nora Van Tilborgh; Stefanie Kerkhofs; Christine Helsen; Lien Spans; Vanessa Dubois; Adriaan B Houtsmuller; Frank Claessens; Annemie Haelens
Journal:  Cell Mol Life Sci       Date:  2010-02-26       Impact factor: 9.261

7.  Diffusion-limited compartmentalization of mammalian cell nuclei assessed by microinjected macromolecules.

Authors:  Sabine M Görisch; Karsten Richter; Markus O Scheuermann; Harald Herrmann; Peter Lichter
Journal:  Exp Cell Res       Date:  2003-10-01       Impact factor: 3.905

8.  Nuclear dynamics of PCNA in DNA replication and repair.

Authors:  Jeroen Essers; Arjan F Theil; Céline Baldeyron; Wiggert A van Cappellen; Adriaan B Houtsmuller; Roland Kanaar; Wim Vermeulen
Journal:  Mol Cell Biol       Date:  2005-11       Impact factor: 4.272

9.  Ligand-specific dynamics of the progesterone receptor in living cells and during chromatin remodeling in vitro.

Authors:  Geetha V Rayasam; Cem Elbi; Dawn A Walker; Ronald Wolford; Terace M Fletcher; Dean P Edwards; Gordon L Hager
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

10.  Rapid glucocorticoid receptor exchange at a promoter is coupled to transcription and regulated by chaperones and proteasomes.

Authors:  Diana A Stavreva; Waltraud G Müller; Gordon L Hager; Carolyn L Smith; James G McNally
Journal:  Mol Cell Biol       Date:  2004-04       Impact factor: 4.272

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  24 in total

Review 1.  Molecular diffusion and binding analyzed with FRAP.

Authors:  Malte Wachsmuth
Journal:  Protoplasma       Date:  2014-01-04       Impact factor: 3.356

2.  Mutations in DNA binding and transactivation domains affect the dynamics of parvovirus NS1 protein.

Authors:  Einari A Niskanen; Olli Kalliolinna; Teemu O Ihalainen; Milla Häkkinen; Maija Vihinen-Ranta
Journal:  J Virol       Date:  2013-08-28       Impact factor: 5.103

3.  ELL, a novel TFIIH partner, is involved in transcription restart after DNA repair.

Authors:  Sophie Mourgues; Violette Gautier; Anna Lagarou; Christine Bordier; Amandine Mourcet; Joris Slingerland; Lara Kaddoum; Frédéric Coin; Wim Vermeulen; Anne Gonzales de Peredo; Bernard Monsarrat; Pierre-Olivier Mari; Giuseppina Giglia-Mari
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-14       Impact factor: 11.205

4.  Binding kinetics of human ISWI chromatin-remodelers to DNA repair sites elucidate their target location mechanism.

Authors:  Fabian Erdel; Karsten Rippe
Journal:  Nucleus       Date:  2011 Mar-Apr       Impact factor: 4.197

5.  Activated STAT1 transcription factors conduct distinct saltatory movements in the cell nucleus.

Authors:  Jasmin Speil; Eugen Baumgart; Jan-Peter Siebrasse; Roman Veith; Uwe Vinkemeier; Ulrich Kubitscheck
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

6.  Dynamics of the DNA repair proteins WRN and BLM in the nucleoplasm and nucleoli.

Authors:  Kristian Moss Bendtsen; Martin Borch Jensen; Alfred May; Lene Juel Rasmussen; Ala Trusina; Vilhelm A Bohr; Mogens H Jensen
Journal:  Eur Biophys J       Date:  2014-08-14       Impact factor: 1.733

7.  Monitoring dynamic binding of chromatin proteins in vivo by fluorescence correlation spectroscopy and temporal image correlation spectroscopy.

Authors:  Davide Mazza; Timothy J Stasevich; Tatiana S Karpova; James G McNally
Journal:  Methods Mol Biol       Date:  2012

Review 8.  Eukaryotic transcriptional dynamics: from single molecules to cell populations.

Authors:  Antoine Coulon; Carson C Chow; Robert H Singer; Daniel R Larson
Journal:  Nat Rev Genet       Date:  2013-07-09       Impact factor: 53.242

Review 9.  Advanced fluorescence microscopy techniques--FRAP, FLIP, FLAP, FRET and FLIM.

Authors:  Hellen C Ishikawa-Ankerhold; Richard Ankerhold; Gregor P C Drummen
Journal:  Molecules       Date:  2012-04-02       Impact factor: 4.411

10.  Measuring chromatin interaction dynamics on the second time scale at single-copy genes.

Authors:  Kunal Poorey; Ramya Viswanathan; Melissa N Carver; Tatiana S Karpova; Shana M Cirimotich; James G McNally; Stefan Bekiranov; David T Auble
Journal:  Science       Date:  2013-10-03       Impact factor: 47.728

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