Literature DB >> 24390250

Molecular diffusion and binding analyzed with FRAP.

Malte Wachsmuth1.   

Abstract

Intracellular molecular transport and localization are crucial for cells (plant cells as much as mammalian cells) to proliferate and to adapt to diverse environmental conditions. Here, some aspects of the microscopy-based method of fluorescence recovery after photobleaching (FRAP) are introduced. In the course of the last years, this has become a very powerful tool to study dynamic processes in living cells and tissue, and it is expected to experience further increasing demand because quantitative information on biological systems becomes more and more important. This review introduces the FRAP methodology, including some theoretical background, describes challenges and pitfalls, and presents some recent advanced applications.

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Year:  2014        PMID: 24390250     DOI: 10.1007/s00709-013-0604-x

Source DB:  PubMed          Journal:  Protoplasma        ISSN: 0033-183X            Impact factor:   3.356


  60 in total

1.  Anomalous diffusion of fluorescent probes inside living cell nuclei investigated by spatially-resolved fluorescence correlation spectroscopy.

Authors:  M Wachsmuth; W Waldeck; J Langowski
Journal:  J Mol Biol       Date:  2000-05-12       Impact factor: 5.469

2.  Cross-validating FRAP and FCS to quantify the impact of photobleaching on in vivo binding estimates.

Authors:  Timothy J Stasevich; Florian Mueller; Ariel Michelman-Ribeiro; Tilman Rosales; Jay R Knutson; James G McNally
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

Review 3.  Fluorescence correlation spectroscopy of molecular motions and kinetics.

Authors:  Michael Gösch; Rudolf Rigler
Journal:  Adv Drug Deliv Rev       Date:  2005-01-02       Impact factor: 15.470

4.  Continuous photobleaching in vesicles and living cells: a measure of diffusion and compartmentation.

Authors:  A Delon; Y Usson; J Derouard; T Biben; C Souchier
Journal:  Biophys J       Date:  2006-01-20       Impact factor: 4.033

5.  Protein-protein interactions determined by fluorescence correlation spectroscopy.

Authors:  J Langowski
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

6.  Quantitative FRAP in analysis of molecular binding dynamics in vivo.

Authors:  James G McNally
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

7.  Dynamics of fluorescence marker concentration as a probe of mobility.

Authors:  D E Koppel; D Axelrod; J Schlessinger; E L Elson; W W Webb
Journal:  Biophys J       Date:  1976-11       Impact factor: 4.033

8.  Fluorescence correlation spectroscopy. II. An experimental realization.

Authors:  D Magde; E L Elson; W W Webb
Journal:  Biopolymers       Date:  1974-01       Impact factor: 2.505

9.  Fluorescence correlation spectroscopy and photobleaching recovery of multiple binding reactions. II. FPR and FCS measurements at low and high DNA concentrations.

Authors:  R D Icenogle; E L Elson
Journal:  Biopolymers       Date:  1983-08       Impact factor: 2.505

10.  Theoretical analysis of fluorescence photobleaching recovery experiments.

Authors:  D M Soumpasis
Journal:  Biophys J       Date:  1983-01       Impact factor: 4.033

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  10 in total

1.  CAMSAP2 organizes a γ-tubulin-independent microtubule nucleation centre through phase separation.

Authors:  Tsuyoshi Imasaki; Satoshi Kikkawa; Shinsuke Niwa; Yumiko Saijo-Hamano; Hideki Shigematsu; Kazuhiro Aoyama; Kaoru Mitsuoka; Takahiro Shimizu; Mari Aoki; Ayako Sakamoto; Yuri Tomabechi; Naoki Sakai; Mikako Shirouzu; Shinya Taguchi; Yosuke Yamagishi; Tomiyoshi Setsu; Yoshiaki Sakihama; Eriko Nitta; Masatoshi Takeichi; Ryo Nitta
Journal:  Elife       Date:  2022-06-28       Impact factor: 8.713

2.  Xist spatially amplifies SHARP/SPEN recruitment to balance chromosome-wide silencing and specificity to the X chromosome.

Authors:  Joanna W Jachowicz; Mackenzie Strehle; Abhik K Banerjee; Mario R Blanco; Jasmine Thai; Mitchell Guttman
Journal:  Nat Struct Mol Biol       Date:  2022-03-17       Impact factor: 18.361

Review 3.  Recent Advances in Fluorescence Recovery after Photobleaching for Decoupling Transport and Kinetics of Biomacromolecules in Cellular Physiology.

Authors:  Ning Cai; Alvin Chi-Keung Lai; Kin Liao; Peter R Corridon; David J Graves; Vincent Chan
Journal:  Polymers (Basel)       Date:  2022-05-07       Impact factor: 4.967

4.  Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells.

Authors:  Malte Wachsmuth; Tobias A Knoch; Karsten Rippe
Journal:  Epigenetics Chromatin       Date:  2016-12-24       Impact factor: 4.954

5.  Dynamic microtubule association of Doublecortin X (DCX) is regulated by its C-terminus.

Authors:  Maryam Moslehi; Dominic C H Ng; Marie A Bogoyevitch
Journal:  Sci Rep       Date:  2017-07-12       Impact factor: 4.379

6.  PhotoGate microscopy to track single molecules in crowded environments.

Authors:  Vladislav Belyy; Sheng-Min Shih; Jigar Bandaria; Yongjian Huang; Rosalie E Lawrence; Roberto Zoncu; Ahmet Yildiz
Journal:  Nat Commun       Date:  2017-01-10       Impact factor: 14.919

7.  A Method for High-Throughput Measurements of Viscosity in Sub-micrometer-Sized Membrane Systems.

Authors:  Grzegorz Chwastek; Eugene P Petrov; James Peter Sáenz
Journal:  Chembiochem       Date:  2019-12-02       Impact factor: 3.164

8.  Fast Diffusion of the Unassembled PetC1-GFP Protein in the Cyanobacterial Thylakoid Membrane.

Authors:  Radek Kaňa; Gábor Steinbach; Roman Sobotka; György Vámosi; Josef Komenda
Journal:  Life (Basel)       Date:  2020-12-29

9.  Overexpression of the microtubule-binding protein CLIP-170 induces a +TIP network superstructure consistent with a biomolecular condensate.

Authors:  Yueh-Fu O Wu; Annamarie T Bryant; Nora T Nelson; Alexander G Madey; Gail F Fernandes; Holly V Goodson
Journal:  PLoS One       Date:  2021-12-10       Impact factor: 3.240

10.  Intranuclear Mobility of Estrogen Receptor: Implication for Transcriptional Regulation.

Authors:  Ken Ichi Matsuda; Takashi Hashimoto; Mitsuhiro Kawata
Journal:  Acta Histochem Cytochem       Date:  2018-08-23       Impact factor: 1.938

  10 in total

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