Literature DB >> 21167178

Crystal structure of SUMO-modified proliferating cell nuclear antigen.

Bret D Freudenthal1, John E Brogie, Lokesh Gakhar, Christine M Kondratick, M Todd Washington.   

Abstract

Eukaryotic proliferating cell nuclear antigen (PCNA) is a replication accessory protein that functions in DNA replication, repair, and recombination. The various functions of PCNA are regulated by posttranslational modifications including mono-ubiquitylation, which promotes translesion synthesis, and sumoylation, which inhibits recombination. To understand how SUMO modification regulates PCNA, we generated a split SUMO-modified PCNA protein and showed that it supports cell viability and stimulates DNA polymerase δ activity. We then determined its X-ray crystal structure and found that SUMO occupies a position on the back face of the PCNA ring, which is distinct from the position occupied by ubiquitin in the structure of ubiquitin-modified PCNA. We propose that the back of PCNA has evolved to be a site of regulation that can be easily modified without disrupting ongoing reactions on the front of PCNA, such as normal DNA replication. Moreover, these modifications likely allow PCNA to function as a tool belt, whereby proteins can be recruited to the replication machinery via the back of PCNA and be held in reserve until needed.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21167178      PMCID: PMC3193175          DOI: 10.1016/j.jmb.2010.12.015

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  42 in total

1.  Interaction of human DNA polymerase eta with monoubiquitinated PCNA: a possible mechanism for the polymerase switch in response to DNA damage.

Authors:  Patricia L Kannouche; Jonathan Wing; Alan R Lehmann
Journal:  Mol Cell       Date:  2004-05-21       Impact factor: 17.970

2.  A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously.

Authors:  Chiara Indiani; Peter McInerney; Roxana Georgescu; Myron F Goodman; Mike O'Donnell
Journal:  Mol Cell       Date:  2005-09-16       Impact factor: 17.970

Review 3.  Principles of ubiquitin and SUMO modifications in DNA repair.

Authors:  Steven Bergink; Stefan Jentsch
Journal:  Nature       Date:  2009-03-26       Impact factor: 49.962

Review 4.  PCNA binding proteins.

Authors:  T Tsurimoto
Journal:  Front Biosci       Date:  1999-12-01

5.  Noncanonical MMS2-encoded ubiquitin-conjugating enzyme functions in assembly of novel polyubiquitin chains for DNA repair.

Authors:  R M Hofmann; C M Pickart
Journal:  Cell       Date:  1999-03-05       Impact factor: 41.582

6.  Pre-steady state kinetic studies of the fidelity of nucleotide incorporation by yeast DNA polymerase delta.

Authors:  Lynne M Dieckman; Robert E Johnson; Satya Prakash; M Todd Washington
Journal:  Biochemistry       Date:  2010-08-31       Impact factor: 3.162

7.  Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation.

Authors:  Philipp Stelter; Helle D Ulrich
Journal:  Nature       Date:  2003-09-11       Impact factor: 49.962

Review 8.  PCNA binding through a conserved motif.

Authors:  E Warbrick
Journal:  Bioessays       Date:  1998-03       Impact factor: 4.345

Review 9.  Coordinating DNA polymerase traffic during high and low fidelity synthesis.

Authors:  Mark D Sutton
Journal:  Biochim Biophys Acta       Date:  2009-06-21

10.  Molecular mimicry of SUMO promotes DNA repair.

Authors:  John Prudden; J Jefferson P Perry; Andrew S Arvai; John A Tainer; Michael N Boddy
Journal:  Nat Struct Mol Biol       Date:  2009-04-12       Impact factor: 15.369

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  16 in total

1.  Solution X-ray scattering combined with computational modeling reveals multiple conformations of covalently bound ubiquitin on PCNA.

Authors:  Susan E Tsutakawa; Adam W Van Wynsberghe; Bret D Freudenthal; Christopher P Weinacht; Lokesh Gakhar; M Todd Washington; Zhihao Zhuang; John A Tainer; Ivaylo Ivanov
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-17       Impact factor: 11.205

Review 2.  The Many Roles of PCNA in Eukaryotic DNA Replication.

Authors:  E M Boehm; M S Gildenberg; M T Washington
Journal:  Enzymes       Date:  2016-04-19

3.  Structurally distinct ubiquitin- and sumo-modified PCNA: implications for their distinct roles in the DNA damage response.

Authors:  Susan E Tsutakawa; Chunli Yan; Xiaojun Xu; Christopher P Weinacht; Bret D Freudenthal; Kun Yang; Zhihao Zhuang; M Todd Washington; John A Tainer; Ivaylo Ivanov
Journal:  Structure       Date:  2015-03-12       Impact factor: 5.006

Review 4.  DNA polymerase delta in DNA replication and genome maintenance.

Authors:  Marc J Prindle; Lawrence A Loeb
Journal:  Environ Mol Mutagen       Date:  2012-10-13       Impact factor: 3.216

Review 5.  Regulation of PCNA-protein interactions for genome stability.

Authors:  Niels Mailand; Ian Gibbs-Seymour; Simon Bekker-Jensen
Journal:  Nat Rev Mol Cell Biol       Date:  2013-04-18       Impact factor: 94.444

6.  Distinct structural alterations in proliferating cell nuclear antigen block DNA mismatch repair.

Authors:  Lynne M Dieckman; Elizabeth M Boehm; Manju M Hingorani; M Todd Washington
Journal:  Biochemistry       Date:  2013-08-02       Impact factor: 3.162

Review 7.  PCNA structure and function: insights from structures of PCNA complexes and post-translationally modified PCNA.

Authors:  Lynne M Dieckman; Bret D Freudenthal; M Todd Washington
Journal:  Subcell Biochem       Date:  2012

8.  Conformational Flexibility of Ubiquitin-Modified and SUMO-Modified PCNA Shown by Full-Ensemble Hybrid Methods.

Authors:  Kyle T Powers; Emily D Lavering; M Todd Washington
Journal:  J Mol Biol       Date:  2018-10-28       Impact factor: 5.469

9.  Recognition of SUMO-modified PCNA requires tandem receptor motifs in Srs2.

Authors:  Anthony A Armstrong; Firaz Mohideen; Christopher D Lima
Journal:  Nature       Date:  2012-02-29       Impact factor: 49.962

10.  Crystallization and preliminary X-ray analysis of the C-type lectin domain of the spicule matrix protein SM50 from Strongylocentrotus purpuratus.

Authors:  Puneet Juneja; Ashit Rao; Helmut Cölfen; Kay Diederichs; Wolfram Welte
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-22       Impact factor: 1.072

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