Literature DB >> 19540941

Coordinating DNA polymerase traffic during high and low fidelity synthesis.

Mark D Sutton1.   

Abstract

With the discovery that organisms possess multiple DNA polymerases (Pols) displaying different fidelities, processivities, and activities came the realization that mechanisms must exist to manage the actions of these diverse enzymes to prevent gratuitous mutations. Although many of the Pols encoded by most organisms are largely accurate, and participate in DNA replication and DNA repair, a sizeable fraction display a reduced fidelity, and act to catalyze potentially error-prone translesion DNA synthesis (TLS) past lesions that persist in the DNA. Striking the proper balance between use of these different enzymes during DNA replication, DNA repair, and TLS is essential for ensuring accurate duplication of the cell's genome. This review highlights mechanisms that organisms utilize to manage the actions of their different Pols. A particular emphasis is placed on discussion of current models for how different Pols switch places with each other at the replication fork during high fidelity replication and potentially error-pone TLS. Copyright (c) 2010 Elsevier B.V. All rights reserved.

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Year:  2009        PMID: 19540941      PMCID: PMC2846234          DOI: 10.1016/j.bbapap.2009.06.010

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  186 in total

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Authors:  Robert W Maul; Laurie H Sanders; James B Lim; Rosemary Benitez; Mark D Sutton
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2.  Elevated expression of DNA polymerase II increases spontaneous mutagenesis in Escherichia coli.

Authors:  Abu Amar M Al Mamun
Journal:  Mutat Res       Date:  2007-05-18       Impact factor: 2.433

3.  A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp.

Authors:  Asako Furukohri; Myron F Goodman; Hisaji Maki
Journal:  J Biol Chem       Date:  2008-02-28       Impact factor: 5.157

4.  Structure of a sliding clamp on DNA.

Authors:  Roxana E Georgescu; Seung-Sup Kim; Olga Yurieva; John Kuriyan; Xiang-Peng Kong; Mike O'Donnell
Journal:  Cell       Date:  2008-01-11       Impact factor: 41.582

5.  Dynamic DNA helicase-DNA polymerase interactions assure processive replication fork movement.

Authors:  Samir M Hamdan; Donald E Johnson; Nathan A Tanner; Jong-Bong Lee; Udi Qimron; Stanley Tabor; Antoine M van Oijen; Charles C Richardson
Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

6.  Characterization of a triple DNA polymerase replisome.

Authors:  Peter McInerney; Aaron Johnson; Francine Katz; Mike O'Donnell
Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

7.  Overproduction of Escherichia coli DNA polymerase DinB (Pol IV) inhibits replication fork progression and is lethal.

Authors:  Kaori Uchida; Asako Furukohri; Yutaka Shinozaki; Tetsuya Mori; Daichi Ogawara; Shigehiko Kanaya; Takehiko Nohmi; Hisaji Maki; Masahiro Akiyama
Journal:  Mol Microbiol       Date:  2008-08-29       Impact factor: 3.501

8.  Division of labor at the eukaryotic replication fork.

Authors:  Stephanie A Nick McElhinny; Dmitry A Gordenin; Carrie M Stith; Peter M J Burgers; Thomas A Kunkel
Journal:  Mol Cell       Date:  2008-04-25       Impact factor: 17.970

9.  Yeast DNA polymerase epsilon participates in leading-strand DNA replication.

Authors:  Zachary F Pursell; Isabelle Isoz; Else-Britt Lundström; Erik Johansson; Thomas A Kunkel
Journal:  Science       Date:  2007-07-06       Impact factor: 47.728

10.  Differential binding of Escherichia coli DNA polymerases to the beta-sliding clamp.

Authors:  Robert W Maul; Sarah K Scouten Ponticelli; Jill M Duzen; Mark D Sutton
Journal:  Mol Microbiol       Date:  2007-08       Impact factor: 3.501

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  44 in total

Review 1.  DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair.

Authors:  Iwona J Fijalkowska; Roel M Schaaper; Piotr Jonczyk
Journal:  FEMS Microbiol Rev       Date:  2012-04-05       Impact factor: 16.408

2.  Escherichia coli DNA polymerase IV (Pol IV), but not Pol II, dynamically switches with a stalled Pol III* replicase.

Authors:  Justin M H Heltzel; Robert W Maul; David W Wolff; Mark D Sutton
Journal:  J Bacteriol       Date:  2012-04-27       Impact factor: 3.490

3.  Mismatch repair causes the dynamic release of an essential DNA polymerase from the replication fork.

Authors:  Andrew D Klocko; Jeremy W Schroeder; Brian W Walsh; Justin S Lenhart; Margery L Evans; Lyle A Simmons
Journal:  Mol Microbiol       Date:  2011-09-30       Impact factor: 3.501

Review 4.  On the sequence-directed nature of human gene mutation: the role of genomic architecture and the local DNA sequence environment in mediating gene mutations underlying human inherited disease.

Authors:  David N Cooper; Albino Bacolla; Claude Férec; Karen M Vasquez; Hildegard Kehrer-Sawatzki; Jian-Min Chen
Journal:  Hum Mutat       Date:  2011-09-02       Impact factor: 4.878

5.  Subunit sharing among high- and low-fidelity DNA polymerases.

Authors:  Lance D Langston; Mike O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-23       Impact factor: 11.205

6.  A direct proofreader-clamp interaction stabilizes the Pol III replicase in the polymerization mode.

Authors:  Slobodan Jergic; Nicholas P Horan; Mohamed M Elshenawy; Claire E Mason; Thitima Urathamakul; Kiyoshi Ozawa; Andrew Robinson; Joris M H Goudsmits; Yao Wang; Xuefeng Pan; Jennifer L Beck; Antoine M van Oijen; Thomas Huber; Samir M Hamdan; Nicholas E Dixon
Journal:  EMBO J       Date:  2013-02-22       Impact factor: 11.598

7.  Competitive fitness during feast and famine: how SOS DNA polymerases influence physiology and evolution in Escherichia coli.

Authors:  Christopher H Corzett; Myron F Goodman; Steven E Finkel
Journal:  Genetics       Date:  2013-04-15       Impact factor: 4.562

8.  Breakthrough for a DNA break-preventer.

Authors:  Richard D Wood; Sabine S Lange
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-14       Impact factor: 11.205

9.  Polymerase exchange on single DNA molecules reveals processivity clamp control of translesion synthesis.

Authors:  James E Kath; Slobodan Jergic; Justin M H Heltzel; Deena T Jacob; Nicholas E Dixon; Mark D Sutton; Graham C Walker; Joseph J Loparo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-13       Impact factor: 11.205

10.  A gatekeeping function of the replicative polymerase controls pathway choice in the resolution of lesion-stalled replisomes.

Authors:  Seungwoo Chang; Karel Naiman; Elizabeth S Thrall; James E Kath; Slobodan Jergic; Nicholas E Dixon; Robert P Fuchs; Joseph J Loparo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-03       Impact factor: 11.205

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