Literature DB >> 21164016

New genes in Drosophila quickly become essential.

Sidi Chen1, Yong E Zhang, Manyuan Long.   

Abstract

To investigate the origin and evolution of essential genes, we identified and phenotyped 195 young protein-coding genes, which originated 3 to 35 million years ago in Drosophila. Knocking down expression with RNA interference showed that 30% of newly arisen genes are essential for viability. The proportion of genes that are essential is similar in every evolutionary age group that we examined. Under constitutive silencing of these young essential genes, lethality was high in the pupal stage and also found in the larval stages. Lethality was attributed to diverse cellular and developmental defects, such as organ formation and patterning defects. These data suggest that new genes frequently and rapidly evolve essential functions and participate in development.

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Year:  2010        PMID: 21164016      PMCID: PMC7211344          DOI: 10.1126/science.1196380

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  25 in total

Review 1.  Coding sequence evolution.

Authors:  M Kreitman; J M Comeron
Journal:  Curr Opin Genet Dev       Date:  1999-12       Impact factor: 5.578

2.  The probability of preservation of a newly arisen gene duplicate.

Authors:  M Lynch; M O'Hely; B Walsh; A Force
Journal:  Genetics       Date:  2001-12       Impact factor: 4.562

Review 3.  The origin of new genes: glimpses from the young and old.

Authors:  Manyuan Long; Esther Betrán; Kevin Thornton; Wen Wang
Journal:  Nat Rev Genet       Date:  2003-11       Impact factor: 53.242

Review 4.  miRBase: the microRNA sequence database.

Authors:  Sam Griffiths-Jones
Journal:  Methods Mol Biol       Date:  2006

5.  Predicting the proportion of essential genes in mouse duplicates based on biased mouse knockout genes.

Authors:  Zhixi Su; Xun Gu
Journal:  J Mol Evol       Date:  2008-12       Impact factor: 2.395

6.  How often do duplicated genes evolve new functions?

Authors:  J B Walsh
Journal:  Genetics       Date:  1995-01       Impact factor: 4.562

7.  Mouse duplicate genes are as essential as singletons.

Authors:  Ben-Yang Liao; Jianzhi Zhang
Journal:  Trends Genet       Date:  2007-06-07       Impact factor: 11.639

8.  Gene essentiality, gene duplicability and protein connectivity in human and mouse.

Authors:  Han Liang; Wen-Hsiung Li
Journal:  Trends Genet       Date:  2007-05-21       Impact factor: 11.639

9.  A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila.

Authors:  Georg Dietzl; Doris Chen; Frank Schnorrer; Kuan-Chung Su; Yulia Barinova; Michaela Fellner; Beate Gasser; Kaolin Kinsey; Silvia Oppel; Susanne Scheiblauer; Africa Couto; Vincent Marra; Krystyna Keleman; Barry J Dickson
Journal:  Nature       Date:  2007-07-12       Impact factor: 49.962

10.  Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome.

Authors:  Annette L Parks; Kevin R Cook; Marcia Belvin; Nicholas A Dompe; Robert Fawcett; Kari Huppert; Lory R Tan; Christopher G Winter; Kevin P Bogart; Jennifer E Deal; Megan E Deal-Herr; Deanna Grant; Marie Marcinko; Wesley Y Miyazaki; Stephanie Robertson; Kenneth J Shaw; Mariano Tabios; Valentina Vysotskaia; Lora Zhao; Rachel S Andrade; Kyle A Edgar; Elizabeth Howie; Keith Killpack; Brett Milash; Amanda Norton; Doua Thao; Kellie Whittaker; Millicent A Winner; Lori Friedman; Jonathan Margolis; Matthew A Singer; Casey Kopczynski; Daniel Curtis; Thomas C Kaufman; Gregory D Plowman; Geoffrey Duyk; Helen L Francis-Lang
Journal:  Nat Genet       Date:  2004-02-22       Impact factor: 38.330

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  141 in total

1.  Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene.

Authors:  Sidi Chen; Xiaochun Ni; Benjamin H Krinsky; Yong E Zhang; Maria D Vibranovski; Kevin P White; Manyuan Long
Journal:  EMBO J       Date:  2012-04-27       Impact factor: 11.598

2.  Neofunctionalization of young duplicate genes in Drosophila.

Authors:  Raquel Assis; Doris Bachtrog
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-07       Impact factor: 11.205

3.  Integration of new genes into cellular networks, and their structural maturation.

Authors:  György Abrusán
Journal:  Genetics       Date:  2013-09-20       Impact factor: 4.562

4.  The "life histories" of genes.

Authors:  Esther Betrán
Journal:  J Mol Evol       Date:  2015-02-03       Impact factor: 2.395

5.  Origin and spread of de novo genes in Drosophila melanogaster populations.

Authors:  Li Zhao; Perot Saelao; Corbin D Jones; David J Begun
Journal:  Science       Date:  2014-01-23       Impact factor: 47.728

Review 6.  Origin of the fittest: link between emergent variation and evolutionary change as a critical question in evolutionary biology.

Authors:  Alexander V Badyaev
Journal:  Proc Biol Sci       Date:  2011-04-13       Impact factor: 5.349

7.  Evolution: Young genes are essential too.

Authors:  Louisa Flintoft
Journal:  Nat Rev Genet       Date:  2011-02       Impact factor: 53.242

Review 8.  The evolutionary origin of orphan genes.

Authors:  Diethard Tautz; Tomislav Domazet-Lošo
Journal:  Nat Rev Genet       Date:  2011-08-31       Impact factor: 53.242

9.  Isoform-selective oligomer formation of Saccharomyces cerevisiae p24 family proteins.

Authors:  Ryogo Hirata; Coh-ichi Nihei; Akihiko Nakano
Journal:  J Biol Chem       Date:  2013-11-11       Impact factor: 5.157

10.  Repeated evolution of testis-specific new genes: the case of telomere-capping genes in Drosophila.

Authors:  Raphaëlle Dubruille; Gabriel A B Marais; Benjamin Loppin
Journal:  Int J Evol Biol       Date:  2012-07-11
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