Literature DB >> 21878963

The evolutionary origin of orphan genes.

Diethard Tautz1, Tomislav Domazet-Lošo.   

Abstract

Gene evolution has long been thought to be primarily driven by duplication and rearrangement mechanisms. However, every evolutionary lineage harbours orphan genes that lack homologues in other lineages and whose evolutionary origin is only poorly understood. Orphan genes might arise from duplication and rearrangement processes followed by fast divergence; however, de novo evolution out of non-coding genomic regions is emerging as an important additional mechanism. This process appears to provide raw material continuously for the evolution of new gene functions, which can become relevant for lineage-specific adaptations.

Mesh:

Year:  2011        PMID: 21878963     DOI: 10.1038/nrg3053

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  98 in total

1.  A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages.

Authors:  Tomislav Domazet-Loso; Josip Brajković; Diethard Tautz
Journal:  Trends Genet       Date:  2007-11       Impact factor: 11.639

Review 2.  Pfam 10 years on: 10,000 families and still growing.

Authors:  Stephen John Sammut; Robert D Finn; Alex Bateman
Journal:  Brief Bioinform       Date:  2008-03-15       Impact factor: 11.622

Review 3.  The locus of evolution: evo devo and the genetics of adaptation.

Authors:  Hopi E Hoekstra; Jerry A Coyne
Journal:  Evolution       Date:  2007-05       Impact factor: 3.694

4.  Recent de novo origin of human protein-coding genes.

Authors:  David G Knowles; Aoife McLysaght
Journal:  Genome Res       Date:  2009-09-02       Impact factor: 9.043

5.  Lateral gene transfer.

Authors:  Olga Zhaxybayeva; W Ford Doolittle
Journal:  Curr Biol       Date:  2011-04-12       Impact factor: 10.834

6.  Human LINE retrotransposons generate processed pseudogenes.

Authors:  C Esnault; J Maestre; T Heidmann
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

7.  Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression.

Authors:  Mia T Levine; Corbin D Jones; Andrew D Kern; Heather A Lindfors; David J Begun
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-15       Impact factor: 11.205

8.  A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand.

Authors:  Dan Li; Yang Dong; Yu Jiang; Huifeng Jiang; Jing Cai; Wen Wang
Journal:  Cell Res       Date:  2010-03-02       Impact factor: 25.617

9.  Myriads of protein families, and still counting.

Authors:  Victor Kunin; Ildefonso Cases; Anton J Enright; Victor de Lorenzo; Christos A Ouzounis
Journal:  Genome Biol       Date:  2003-01-28       Impact factor: 13.583

10.  Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space.

Authors:  Russell L Marsden; David Lee; Michael Maibaum; Corin Yeats; Christine A Orengo
Journal:  Nucleic Acids Res       Date:  2006-02-15       Impact factor: 16.971

View more
  275 in total

Review 1.  Life at the extreme: lessons from the genome.

Authors:  Dong-Ha Oh; Maheshi Dassanayake; Hans J Bohnert; John M Cheeseman
Journal:  Genome Biol       Date:  2012       Impact factor: 13.583

2.  Evolution: the birth of new genes.

Authors:  Mary Muers
Journal:  Nat Rev Genet       Date:  2012-07-03       Impact factor: 53.242

3.  The relativity of biological function.

Authors:  Manfred D Laubichler; Peter F Stadler; Sonja J Prohaska; Katja Nowick
Journal:  Theory Biosci       Date:  2015-10-08       Impact factor: 1.919

Review 4.  Nervous systems and scenarios for the invertebrate-to-vertebrate transition.

Authors:  Nicholas D Holland
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-01-05       Impact factor: 6.237

5.  Evaluating Phylostratigraphic Evidence for Widespread De Novo Gene Birth in Genome Evolution.

Authors:  Bryan A Moyers; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2016-01-11       Impact factor: 16.240

6.  Evolutionary origins of a bioactive peptide buried within Preproalbumin.

Authors:  Alysha G Elliott; Christina Delay; Huanle Liu; Zaiyang Phua; K Johan Rosengren; Aurélie H Benfield; Jose L Panero; Michelle L Colgrave; Achala S Jayasena; Kerry M Dunse; Marilyn A Anderson; Edward E Schilling; Daniel Ortiz-Barrientos; David J Craik; Joshua S Mylne
Journal:  Plant Cell       Date:  2014-03-28       Impact factor: 11.277

7.  Apcdd1 is a dual BMP/Wnt inhibitor in the developing nervous system and skin.

Authors:  Alin Vonica; Neha Bhat; Keith Phan; Jinbai Guo; Lăcrimioara Iancu; Jessica A Weber; Amir Karger; John W Cain; Etienne C E Wang; Gina M DeStefano; Anne H O'Donnell-Luria; Angela M Christiano; Bruce Riley; Samantha J Butler; Victor Luria
Journal:  Dev Biol       Date:  2020-04-19       Impact factor: 3.582

8.  Hypothetical proteins present during recovery phase of radiation resistant bacterium Deinococcus radiodurans are under purifying selection.

Authors:  Anubrata D Das; Hari S Misra
Journal:  J Mol Evol       Date:  2013-08-10       Impact factor: 2.395

9.  Positive selection within a diatom species acts on putative protein interactions and transcriptional regulation.

Authors:  Julie A Koester; Willie J Swanson; E Virginia Armbrust
Journal:  Mol Biol Evol       Date:  2012-10-23       Impact factor: 16.240

10.  Molecular heterochrony and the evolution of sociality in bumblebees (Bombus terrestris).

Authors:  S Hollis Woodard; Guy M Bloch; Mark R Band; Gene E Robinson
Journal:  Proc Biol Sci       Date:  2014-02-19       Impact factor: 5.349

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.