Literature DB >> 17512629

Gene essentiality, gene duplicability and protein connectivity in human and mouse.

Han Liang1, Wen-Hsiung Li.   

Abstract

It has previously been found that, in yeast, gene essentiality is positively correlated with protein connectivity (number of interaction partners) but negatively correlated with the existence of gene duplicates and that highly connected proteins tend to have a low gene duplicability. Using data from human and mouse, we show here that, in mammals, the first of these relationships holds true, but unlike the second relationship in yeast, highly connected mammalian proteins tend to have a high gene duplicability, and there is no correlation between gene essentiality and gene duplication in mammals.

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Year:  2007        PMID: 17512629     DOI: 10.1016/j.tig.2007.04.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  59 in total

1.  Identification and characterization of essential genes in the human genome.

Authors:  Tim Wang; Kıvanç Birsoy; Nicholas W Hughes; Kevin M Krupczak; Yorick Post; Jenny J Wei; Eric S Lander; David M Sabatini
Journal:  Science       Date:  2015-10-15       Impact factor: 47.728

2.  ancGWAS: a post genome-wide association study method for interaction, pathway and ancestry analysis in homogeneous and admixed populations.

Authors:  Emile R Chimusa; Mamana Mbiyavanga; Gaston K Mazandu; Nicola J Mulder
Journal:  Bioinformatics       Date:  2015-10-27       Impact factor: 6.937

3.  Predicting the proportion of essential genes in mouse duplicates based on biased mouse knockout genes.

Authors:  Zhixi Su; Xun Gu
Journal:  J Mol Evol       Date:  2008-12       Impact factor: 2.395

Review 4.  Evolution of biomolecular networks: lessons from metabolic and protein interactions.

Authors:  Takuji Yamada; Peer Bork
Journal:  Nat Rev Mol Cell Biol       Date:  2009-11       Impact factor: 94.444

5.  Null mutations in human and mouse orthologs frequently result in different phenotypes.

Authors:  Ben-Yang Liao; Jianzhi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-05       Impact factor: 11.205

6.  Functional compensation by duplicated genes in mouse.

Authors:  Han Liang; Wen-Hsiung Li
Journal:  Trends Genet       Date:  2009-09-25       Impact factor: 11.639

7.  Abundant indispensable redundancies in cellular metabolic networks.

Authors:  Zhi Wang; Jianzhi Zhang
Journal:  Genome Biol Evol       Date:  2009-04-30       Impact factor: 3.416

8.  Duplicability of self-interacting human genes.

Authors:  Asa Pérez-Bercoff; Takashi Makino; Aoife McLysaght
Journal:  BMC Evol Biol       Date:  2010-05-28       Impact factor: 3.260

9.  Impact of extracellularity on the evolutionary rate of mammalian proteins.

Authors:  Ben-Yang Liao; Meng-Pin Weng; Jianzhi Zhang
Journal:  Genome Biol Evol       Date:  2010-01-06       Impact factor: 3.416

10.  Human gene expression sensitivity according to large scale meta-analysis.

Authors:  Pei Hao; Siyuan Zheng; Jie Ping; Kang Tu; Christian Gieger; Rui Wang-Sattler; Yang Zhong; Yixue Li
Journal:  BMC Bioinformatics       Date:  2009-01-30       Impact factor: 3.169

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