Literature DB >> 21153672

In silico characterization of thermostable lipases.

Debamitra Chakravorty1, Saravanan Parameswaran, Vikash Kumar Dubey, Sanjukta Patra.   

Abstract

Thermostable lipases are of high priority for industrial applications as they are endowed with the capability of carrying out diversified reactions at elevated temperatures. Extremophiles are their potential source. Sequence and structure annotation of thermostable lipases can elucidate evolution of lipases from their mesophilic counterparts with enhanced thermostability hence better industrial potential. Sequence analysis highlighted the conserved residues in bacterial and fungal thermostable lipases. Higher frequency of AXXXA motif and poly Ala residues in lid domain of thermostable Bacillus lipases were distinguishing characteristics. Comparison of amino acid composition among thermostable and mesostable lipases brought into light the role of neutral, charged and aromatic amino acid residues in enhancement of thermostability. Structural annotation of thermostable lipases with that of mesostable lipases revealed some striking features which are increment of gamma turns in thermostable lipases; being first time reported in our paper, longer beta strands, lesser beta-branched residues in helices, increase in charged-neutral hydrogen bonding pair, hydrophobic-hydrophobic contact and differences in the N-cap and C-cap residues of the α helices. Conclusively, it can be stated that subtle changes in the arrangement of amino acid residues in the tertiary structure of lipases contributes to enhanced thermostability.

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Year:  2010        PMID: 21153672     DOI: 10.1007/s00792-010-0337-0

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  82 in total

1.  Novel zinc-binding center and a temperature switch in the Bacillus stearothermophilus L1 lipase.

Authors:  Seong-Tae Jeong; Hyung-Kwoun Kim; Seung-Jun Kim; Seung-Wook Chi; Jae-Gu Pan; Tae-Kwang Oh; Seong-Eon Ryu
Journal:  J Biol Chem       Date:  2002-02-21       Impact factor: 5.157

2.  Important inter-residue contacts for enhancing the thermal stability of thermophilic proteins.

Authors:  M M Gromiha
Journal:  Biophys Chem       Date:  2001-06-15       Impact factor: 2.352

3.  How do lipases and esterases work: the electrostatic contribution.

Authors:  M T Neves Petersen; P Fojan; S B Petersen
Journal:  J Biotechnol       Date:  2001-02-13       Impact factor: 3.307

4.  Role of cation-pi interactions to the stability of thermophilic proteins.

Authors:  M Michael Gromiha; Shali Thomas; C Santhosh
Journal:  Prep Biochem Biotechnol       Date:  2002-11       Impact factor: 2.162

5.  Crystal structure of a thermostable lipase from Bacillus stearothermophilus P1.

Authors:  Joel D A Tyndall; Supachok Sinchaikul; Linda A Fothergill-Gilmore; Paul Taylor; Malcolm D Walkinshaw
Journal:  J Mol Biol       Date:  2002-11-08       Impact factor: 5.469

6.  Locating the stabilizing residues in (alpha/beta)8 barrel proteins based on hydrophobicity, long-range interactions, and sequence conservation.

Authors:  M Michael Gromiha; Gerard Pujadas; Csaba Magyar; Samuel Selvaraj; Istvan Simon
Journal:  Proteins       Date:  2004-05-01

7.  Increasing the thermostability of a neutral protease by replacing positively charged amino acids in the N-terminal turn of alpha-helices.

Authors:  V G Eijsink; G Vriend; B van den Burg; J R van der Zee; G Venema
Journal:  Protein Eng       Date:  1992-03

8.  Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins.

Authors:  T Fujii; Y Hata; T Wakagi; N Tanaka; T Oshima
Journal:  Nat Struct Biol       Date:  1996-10

9.  Effects of growth rate on the production of Pseudomonas fluorescens lipase during the fed-batch cultivation of Escherichia coli.

Authors:  S S Kim; E K Kim; J S Rhee
Journal:  Biotechnol Prog       Date:  1996 Sep-Oct

10.  CUPSAT: prediction of protein stability upon point mutations.

Authors:  Vijaya Parthiban; M Michael Gromiha; Dietmar Schomburg
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

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  9 in total

Review 1.  Multifactorial level of extremostability of proteins: can they be exploited for protein engineering?

Authors:  Debamitra Chakravorty; Mohd Faheem Khan; Sanjukta Patra
Journal:  Extremophiles       Date:  2017-03-10       Impact factor: 2.395

2.  Bioprospecting hot spring metagenome: lipase for the production of biodiesel.

Authors:  Rajesh Kumar Sahoo; Mohit Kumar; Lala Behari Sukla; Enketeswara Subudhi
Journal:  Environ Sci Pollut Res Int       Date:  2016-11-28       Impact factor: 4.223

3.  Characterization of a Novel Alkalophilic Lipase From Aneurinibacillus thermoaerophilus: Lid Heterogeneity and Assignment to Family I.5.

Authors:  Ximena Zottig; Fatma Meddeb-Mouelhi; David M Charbonneau; Marc Beauregard
Journal:  Protein J       Date:  2017-12       Impact factor: 2.371

4.  Identification of a Novel Lipase with AHSMG Pentapeptide in Hypocreales and Glomerellales Filamentous Fungi.

Authors:  Denise Esther Gutiérrez-Domínguez; Bartolomé Chí-Manzanero; María Mercedes Rodríguez-Argüello; Jewel Nicole Anna Todd; Ignacio Islas-Flores; Miguel Ángel Canseco-Pérez; Blondy Canto-Canché
Journal:  Int J Mol Sci       Date:  2022-08-19       Impact factor: 6.208

5.  cDNA cloning and molecular modeling of procerain B, a novel cysteine endopeptidase isolated from Calotropis procera.

Authors:  Abhay Narayan Singh; Prity Yadav; Vikash Kumar Dubey
Journal:  PLoS One       Date:  2013-03-20       Impact factor: 3.240

Review 6.  Thermus thermophilus as a Source of Thermostable Lipolytic Enzymes.

Authors:  Olalla López-López; María-Esperanza Cerdán; María-Isabel González-Siso
Journal:  Microorganisms       Date:  2015-11-04

7.  Directed Evolution of Recombinant C-Terminal Truncated Staphylococcus epidermidis Lipase AT2 for the Enhancement of Thermostability.

Authors:  Jiivittha Veno; Nor Hafizah Ahmad Kamarudin; Mohd Shukuri Mohamad Ali; Malihe Masomian; Raja Noor Zaliha Raja Abd Rahman
Journal:  Int J Mol Sci       Date:  2017-11-04       Impact factor: 5.923

8.  Molecular, biochemical and kinetic analysis of a novel, thermostable lipase (LipSm) from Stenotrophomonas maltophilia Psi-1, the first member of a new bacterial lipase family (XVIII).

Authors:  Maria Parapouli; Athanasios Foukis; Panagiota-Yiolanda Stergiou; Maria Koukouritaki; Panagiotis Magklaras; Olga A Gkini; Emmanuel M Papamichael; Amalia-Sofia Afendra; Efstathios Hatziloukas
Journal:  J Biol Res (Thessalon)       Date:  2018-02-08       Impact factor: 1.889

9.  RankProt: A multi criteria-ranking platform to attain protein thermostabilizing mutations and its in vitro applications - Attribute based prediction method on the principles of Analytical Hierarchical Process.

Authors:  Debamitra Chakravorty; Sanjukta Patra
Journal:  PLoS One       Date:  2018-10-04       Impact factor: 3.240

  9 in total

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