Literature DB >> 28283770

Multifactorial level of extremostability of proteins: can they be exploited for protein engineering?

Debamitra Chakravorty1, Mohd Faheem Khan1, Sanjukta Patra2.   

Abstract

Research on extremostable proteins has seen immense growth in the past decade owing to their industrial importance. Basic research of attributes related to extreme-stability requires further exploration. Modern mechanistic approaches to engineer such proteins in vitro will have more impact in industrial biotechnology economy. Developing a priori knowledge about the mechanism behind extreme-stability will nurture better understanding of pathways leading to protein molecular evolution and folding. This review is a vivid compilation about all classes of extremostable proteins and the attributes that lead to myriad of adaptations divulged after an extensive study of 6495 articles belonging to extremostable proteins. Along with detailing on the rationale behind extreme-stability of proteins, emphasis has been put on modern approaches that have been utilized to render proteins extremostable by protein engineering. It was understood that each protein shows different approaches to extreme-stability governed by minute differences in their biophysical properties and the milieu in which they exist. Any general rule has not yet been drawn regarding adaptive mechanisms in extreme environments. This review was further instrumental to understand the drawback of the available 14 stabilizing mutation prediction algorithms. Thus, this review lays the foundation to further explore the biophysical pleiotropy of extreme-stable proteins to deduce a global prediction model for predicting the effect of mutations on protein stability.

Keywords:  Application; Barostability; Engineering; Extreme-stability; Halostability; Mutation; Thermostability; pH stability

Mesh:

Year:  2017        PMID: 28283770     DOI: 10.1007/s00792-016-0908-9

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  219 in total

Review 1.  Life in extreme environments.

Authors:  L J Rothschild; R L Mancinelli
Journal:  Nature       Date:  2001-02-22       Impact factor: 49.962

2.  The C-terminal sterile alpha motif (SAM) domain of human p73 is a highly dynamic protein, which acquires high thermal stability through a decrease in backbone flexibility.

Authors:  José L Neira; Paz Sevilla; Francisco García-Blanco
Journal:  Phys Chem Chem Phys       Date:  2012-06-22       Impact factor: 3.676

3.  A comparison of proteins from Pyrococcus furiosus and Pyrococcus abyssi: barophily in the physicochemical properties of amino acids and in the genetic code.

Authors:  Massimo Di Giulio
Journal:  Gene       Date:  2004-12-30       Impact factor: 3.688

4.  HBAT: a complete package for analysing strong and weak hydrogen bonds in macromolecular crystal structures.

Authors:  Abhishek Tiwari; Sunil K Panigrahi
Journal:  In Silico Biol       Date:  2007

Review 5.  Molecular adaptations in psychrophilic bacteria: potential for biotechnological applications.

Authors:  N J Russell
Journal:  Adv Biochem Eng Biotechnol       Date:  1998       Impact factor: 2.635

Review 6.  Cold-adapted enzymes.

Authors:  C J Marshall
Journal:  Trends Biotechnol       Date:  1997-09       Impact factor: 19.536

Review 7.  Salt-dependent properties of proteins from extremely halophilic bacteria.

Authors:  J K Lanyi
Journal:  Bacteriol Rev       Date:  1974-09

8.  Microbial reduction of Fe(III) in acidic sediments: isolation of Acidiphilium cryptum JF-5 capable of coupling the reduction of Fe(III) to the oxidation of glucose.

Authors:  K Küsel; T Dorsch; G Acker; E Stackebrandt
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

9.  Disulfide bond effects on protein stability: designed variants of Cucurbita maxima trypsin inhibitor-V.

Authors:  M Zavodszky; C W Chen; J K Huang; M Zolkiewski; L Wen; R Krishnamoorthi
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

10.  Evolution and thermodynamics of the slow unfolding of hyperstable monomeric proteins.

Authors:  Jun Okada; Tomohiro Okamoto; Atsushi Mukaiyama; Takashi Tadokoro; Dong-Ju You; Hyongi Chon; Yuichi Koga; Kazufumi Takano; Shigenori Kanaya
Journal:  BMC Evol Biol       Date:  2010-07-09       Impact factor: 3.260

View more
  6 in total

Review 1.  Structural and functional adaptation in extremophilic microbial α-amylases.

Authors:  Aziz Ahmad; Rajesh Mishra
Journal:  Biophys Rev       Date:  2022-01-24

Review 2.  Recent Development of Extremophilic Bacteria and Their Application in Biorefinery.

Authors:  Daochen Zhu; Wasiu Adewale Adebisi; Fiaz Ahmad; Sivasamy Sethupathy; Blessing Danso; Jianzhong Sun
Journal:  Front Bioeng Biotechnol       Date:  2020-06-12

3.  Structure and function of the Ts2631 endolysin of Thermus scotoductus phage vB_Tsc2631 with unique N-terminal extension used for peptidoglycan binding.

Authors:  Magdalena Plotka; Enea Sancho-Vaello; Sebastian Dorawa; Anna-Karina Kaczorowska; Lukasz P Kozlowski; Tadeusz Kaczorowski; Kornelius Zeth
Journal:  Sci Rep       Date:  2019-02-04       Impact factor: 4.379

4.  Computational design of noncanonical amino acid-based thioether staples at N/C-terminal domains of multi-modular pullulanase for thermostabilization in enzyme catalysis.

Authors:  Jiahua Bi; Xiaoran Jing; Lunjie Wu; Xia Zhou; Jie Gu; Yao Nie; Yan Xu
Journal:  Comput Struct Biotechnol J       Date:  2021-01-05       Impact factor: 7.271

5.  Phylogenetic, functional and structural characterization of a GH10 xylanase active at extreme conditions of temperature and alkalinity.

Authors:  David Talens-Perales; Elena Jiménez-Ortega; Paloma Sánchez-Torres; Julia Sanz-Aparicio; Julio Polaina
Journal:  Comput Struct Biotechnol J       Date:  2021-05-03       Impact factor: 7.271

6.  Deciphering the rationale behind specific codon usage pattern in extremophiles.

Authors:  Mohd Faheem Khan; Sanjukta Patra
Journal:  Sci Rep       Date:  2018-10-19       Impact factor: 4.379

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.