Literature DB >> 11165360

How do lipases and esterases work: the electrostatic contribution.

M T Neves Petersen1, P Fojan, S B Petersen.   

Abstract

This work explores the role of one of the factors explaining lipase/esterase activity: the contribution of electrostatic interactions to lipase/esterase activity. The electrostatic potential distribution on the molecular surface of an enzyme as a function of pH determines, to a large extent, the enzyme's pH activity profile. Other important factors include the presence and distribution of polar and hydrophobic residues in the active cleft. We have mapped the electrostatic potential distribution as a function of pH on the molecular surface of nine lipases/esterases for which the 3D structure is experimentally known. A comparison of these potential maps at different pH values with the corresponding pH-activity profile, pH optimum or pH range where the activity displayed by the enzyme is maximum, has revealed a considerable correlation. A negative potential in the active site appears correlated with maximum activity towards triglycerides, which has prompted us to propose a model for product release ('The electrostatic catapult model') after cleavage of an ester bond. At the same time as the bottom of the active site cleft becomes negatively charged, other nearby regions also titrate and become negatively charged when pH becomes more alkaline, for some of the studied lipases. If such lipases also show phospholipase activity (such as guinea pig lipase-related proteins 2 chimera) we raise the hypothesis that such other titratable regions after becoming negatively charged might stabilise the positive charge present in the polar head of phospholipids, such as phosphatidylcholine, phosphatidylethanolamine and phosphatidylserine. The distribution of polar, weak polar and non-polar residues on the molecular surface of each studied lipase, in particular the active site region, was compared for all the lipases studied. The combination of graphical visualisation of the electrostatic potential maps and the polarity maps combined with knowledge about the location of key residues on the protein surface allows us to envision atomic models for lipolytic activity.

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Year:  2001        PMID: 11165360     DOI: 10.1016/s0168-1656(00)00360-6

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  23 in total

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2.  Towards control of aggregational behaviour of alpha-lactalbumin at acidic pH.

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Journal:  J Fluoresc       Date:  2006-06-22       Impact factor: 2.217

3.  The Thermal Stability of the Fusarium solani pisi Cutinase as a Function of pH.

Authors:  Steffen B. Petersen; Peter Fojan; Evamaria I. Petersen; Maria Teresa Neves Petersen
Journal:  J Biomed Biotechnol       Date:  2001

4.  Insight into substituent effects in Cal-B catalyzed transesterification by combining experimental and theoretical approaches.

Authors:  Zhong Ni; Xianfu Lin
Journal:  J Mol Model       Date:  2012-08-25       Impact factor: 1.810

5.  RMS2 Encoding a GDSL Lipase Mediates Lipid Homeostasis in Anthers to Determine Rice Male Fertility.

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Journal:  Plant Physiol       Date:  2020-02-06       Impact factor: 8.340

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Journal:  J Food Sci Technol       Date:  2013-08-15       Impact factor: 2.701

7.  Biochemical characterization of an esterase from Clostridium acetobutylicum with novel GYSMG pentapeptide motif at the catalytic domain.

Authors:  Vijayalakshmi Nagaroor; Sathyanarayana N Gummadi
Journal:  J Ind Microbiol Biotechnol       Date:  2019-12-05       Impact factor: 3.346

8.  Characterization of a novel esterase Rv0045c from Mycobacterium tuberculosis.

Authors:  Jiubiao Guo; Xiangdong Zheng; Lipeng Xu; Zhongyuan Liu; Kehui Xu; Shentao Li; Tingyi Wen; Siguo Liu; Hai Pang
Journal:  PLoS One       Date:  2010-10-01       Impact factor: 3.240

9.  Fluorescence spectroscopic analysis of the structure and dynamics of Bacillus subtilis lipase A governing its activity profile under alkaline conditions.

Authors:  Daniel Kübler; Kim N Ingenbosch; Anna Bergmann; Monika Weidmann; Kerstin Hoffmann-Jacobsen
Journal:  Eur Biophys J       Date:  2015-07-30       Impact factor: 1.733

10.  Understanding structural features of microbial lipases--an overview.

Authors:  John Geraldine Sandana Mala; Satoru Takeuchi
Journal:  Anal Chem Insights       Date:  2008-03-27
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