Literature DB >> 21145479

The chromatin signaling pathway: diverse mechanisms of recruitment of histone-modifying enzymes and varied biological outcomes.

Edwin Smith1, Ali Shilatifard.   

Abstract

Posttranslational modifications of histones are coupled in the regulation of the cellular processes involving chromatin, such as transcription, replication, repair, and genome stability. Recent biochemical and genetic studies have clearly demonstrated that many aspects of chromatin, in addition to posttranslational modifications of histones, provide surfaces that can interact with effectors and the modifying machineries in a context-dependent manner, all as a part of the "chromatin signaling pathway." Here, we have reviewed recent findings on the molecular basis for the recruitment of the chromatin-modifying machineries and their diverse and varied biological outcomes.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21145479      PMCID: PMC3037032          DOI: 10.1016/j.molcel.2010.11.031

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  161 in total

1.  Knockdown of ALR (MLL2) reveals ALR target genes and leads to alterations in cell adhesion and growth.

Authors:  Irina Issaeva; Yulia Zonis; Tanya Rozovskaia; Kira Orlovsky; Carlo M Croce; Tatsuya Nakamura; Alex Mazo; Lea Eisenbach; Eli Canaani
Journal:  Mol Cell Biol       Date:  2006-12-18       Impact factor: 4.272

Review 2.  Polycomb/Trithorax response elements and epigenetic memory of cell identity.

Authors:  Leonie Ringrose; Renato Paro
Journal:  Development       Date:  2007-01       Impact factor: 6.868

Review 3.  Chromatin modifications and their function.

Authors:  Tony Kouzarides
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 4.  Genome regulation by polycomb and trithorax proteins.

Authors:  Bernd Schuettengruber; Daniel Chourrout; Michel Vervoort; Benjamin Leblanc; Giacomo Cavalli
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

5.  Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin.

Authors:  Bing Li; Madelaine Gogol; Mike Carey; Daeyoup Lee; Chris Seidel; Jerry L Workman
Journal:  Science       Date:  2007-05-18       Impact factor: 47.728

Review 6.  The complex language of chromatin regulation during transcription.

Authors:  Shelley L Berger
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

7.  Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.

Authors:  John L Rinn; Michael Kertesz; Jordon K Wang; Sharon L Squazzo; Xiao Xu; Samantha A Brugmann; L Henry Goodnough; Jill A Helms; Peggy J Farnham; Eran Segal; Howard Y Chang
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

Review 8.  Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark.

Authors:  Alexander J Ruthenburg; C David Allis; Joanna Wysocka
Journal:  Mol Cell       Date:  2007-01-12       Impact factor: 17.970

9.  Identification and characterization of the human Set1B histone H3-Lys4 methyltransferase complex.

Authors:  Jeong-Heon Lee; Courtney M Tate; Jin-Sam You; David G Skalnik
Journal:  J Biol Chem       Date:  2007-03-13       Impact factor: 5.157

Review 10.  The mammalian epigenome.

Authors:  Bradley E Bernstein; Alexander Meissner; Eric S Lander
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

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  117 in total

1.  A biosensor-based approach reveals links between efflux pump expression and cell cycle regulation in pleiotropic drug resistance of yeast.

Authors:  Jian Li; Kristen Kolberg; Ulrich Schlecht; Robert P St Onge; Ana Maria Aparicio; Joe Horecka; Ronald W Davis; Maureen E Hillenmeyer; Colin J B Harvey
Journal:  J Biol Chem       Date:  2018-12-04       Impact factor: 5.157

Review 2.  The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis.

Authors:  Ali Shilatifard
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

3.  Operating on chromatin, a colorful language where context matters.

Authors:  Kathryn E Gardner; C David Allis; Brian D Strahl
Journal:  J Mol Biol       Date:  2011-01-25       Impact factor: 5.469

4.  Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses.

Authors:  Joshua M Gilmore; Mihaela E Sardiu; Swaminathan Venkatesh; Brent Stutzman; Allison Peak; Chris W Seidel; Jerry L Workman; Laurence Florens; Michael P Washburn
Journal:  Mol Cell Proteomics       Date:  2011-12-22       Impact factor: 5.911

5.  Genome-wide function of H2B ubiquitylation in promoter and genic regions.

Authors:  Kiran Batta; Zhenhai Zhang; Kuangyu Yen; David B Goffman; B Franklin Pugh
Journal:  Genes Dev       Date:  2011-11-01       Impact factor: 11.361

6.  Codependency of H2B monoubiquitination and nucleosome reassembly on Chd1.

Authors:  Jung-Shin Lee; Alexander S Garrett; Kuangyu Yen; Yoh-Hei Takahashi; Deqing Hu; Jessica Jackson; Christopher Seidel; B Franklin Pugh; Ali Shilatifard
Journal:  Genes Dev       Date:  2012-05-01       Impact factor: 11.361

7.  Histone H3R17me2a mark recruits human RNA polymerase-associated factor 1 complex to activate transcription.

Authors:  Jiacai Wu; Wei Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-26       Impact factor: 11.205

8.  Emerging Chemistry Strategies for Engineering Native Chromatin.

Authors:  Yael David; Tom W Muir
Journal:  J Am Chem Soc       Date:  2017-06-27       Impact factor: 15.419

9.  Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae.

Authors:  Vicki E Maltby; Benjamin J E Martin; Julie Brind'Amour; Adam T Chruscicki; Kristina L McBurney; Julia M Schulze; Ian J Johnson; Mark Hills; Thomas Hentrich; Michael S Kobor; Matthew C Lorincz; LeAnn J Howe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

Review 10.  Epigenetic mechanisms in diabetic complications and metabolic memory.

Authors:  Marpadga A Reddy; Erli Zhang; Rama Natarajan
Journal:  Diabetologia       Date:  2014-12-07       Impact factor: 10.122

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