Literature DB >> 22663077

The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis.

Ali Shilatifard1.   

Abstract

The Saccharomyces cerevisiae Set1/COMPASS was the first histone H3 lysine 4 (H3K4) methylase identified over 10 years ago. Since then, it has been demonstrated that Set1/COMPASS and its enzymatic product, H3K4 methylation, is highly conserved across the evolutionary tree. Although there is only one COMPASS in yeast, Drosophila possesses three and humans bear six COMPASS family members, each capable of methylating H3K4 with nonredundant functions. In yeast, the histone H2B monoubiquitinase Rad6/Bre1 is required for proper H3K4 and H3K79 trimethylations. The machineries involved in this process are also highly conserved from yeast to human. In this review, the process of histone H2B monoubiquitination-dependent and -independent histone H3K4 methylation as a mark of active transcription, enhancer signatures, and developmentally poised genes is discussed. The misregulation of histone H2B monoubiquitination and H3K4 methylation result in the pathogenesis of human diseases, including cancer. Recent findings in this regard are also examined.

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Year:  2012        PMID: 22663077      PMCID: PMC4010150          DOI: 10.1146/annurev-biochem-051710-134100

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  192 in total

Review 1.  Chromatin silencing and activation by Polycomb and trithorax group proteins.

Authors:  T Mahmoudi; C P Verrijzer
Journal:  Oncogene       Date:  2001-05-28       Impact factor: 9.867

2.  Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

Review 3.  Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins.

Authors:  Leonie Ringrose; Renato Paro
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

4.  Protein interactions within the Set1 complex and their roles in the regulation of histone 3 lysine 4 methylation.

Authors:  Pierre-Marie Dehé; Bernhard Dichtl; Daniel Schaft; Assen Roguev; Mercè Pamblanco; Régine Lebrun; Alfonso Rodríguez-Gil; Msau Mkandawire; Katarina Landsberg; Anna Shevchenko; Andrej Shevchenko; Lorena E Rosaleny; Vicente Tordera; Sebastián Chávez; A Francis Stewart; Vincent Géli
Journal:  J Biol Chem       Date:  2006-08-18       Impact factor: 5.157

5.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

6.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

7.  Molecular genetic analysis of the Drosophila trithorax-related gene which encodes a novel SET domain protein.

Authors:  Y Sedkov; J J Benes; J R Berger; K M Riker; S Tillib; R S Jones; A Mazo
Journal:  Mech Dev       Date:  1999-04       Impact factor: 1.882

8.  Trithorax and dCBP acting in a complex to maintain expression of a homeotic gene.

Authors:  S Petruk; Y Sedkov; S Smith; S Tillib; V Kraevski; T Nakamura; E Canaani; C M Croce; A Mazo
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

9.  Parafibromin, a component of the human PAF complex, regulates growth factors and is required for embryonic development and survival in adult mice.

Authors:  Pengfei Wang; Michael R Bowl; Stephanie Bender; Jun Peng; Leslie Farber; Jindong Chen; Asif Ali; Zhongfa Zhang; Arthur S Alberts; Rajesh V Thakker; Ali Shilatifard; Bart O Williams; Bin Tean Teh
Journal:  Mol Cell Biol       Date:  2008-01-22       Impact factor: 4.272

10.  Hox Gene Loss during Dynamic Evolution of the Nematode Cluster.

Authors:  A Aziz Aboobaker; Mark L Blaxter
Journal:  Curr Biol       Date:  2003-01-08       Impact factor: 10.834

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  451 in total

Review 1.  Polycomb and Trithorax Group Genes in Drosophila.

Authors:  Judith A Kassis; James A Kennison; John W Tamkun
Journal:  Genetics       Date:  2017-08       Impact factor: 4.562

Review 2.  Epigenetic regulation of ageing: linking environmental inputs to genomic stability.

Authors:  Bérénice A Benayoun; Elizabeth A Pollina; Anne Brunet
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09-16       Impact factor: 94.444

3.  HIV Tat controls RNA Polymerase II and the epigenetic landscape to transcriptionally reprogram target immune cells.

Authors:  Jonathan E Reeder; Youn-Tae Kwak; Ryan P McNamara; Christian V Forst; Iván D'Orso
Journal:  Elife       Date:  2015-10-21       Impact factor: 8.140

4.  Genome-Wide Studies Reveal that H3K4me3 Modification in Bivalent Genes Is Dynamically Regulated during the Pluripotent Cell Cycle and Stabilized upon Differentiation.

Authors:  Rodrigo A Grandy; Troy W Whitfield; Hai Wu; Mark P Fitzgerald; Jennifer J VanOudenhove; Sayyed K Zaidi; Martin A Montecino; Jane B Lian; André J van Wijnen; Janet L Stein; Gary S Stein
Journal:  Mol Cell Biol       Date:  2015-12-07       Impact factor: 4.272

5.  A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory.

Authors:  Jörn Lämke; Krzysztof Brzezinka; Simone Altmann; Isabel Bäurle
Journal:  EMBO J       Date:  2015-12-09       Impact factor: 11.598

6.  SETD1A induced miRNA network suppresses the p53 gene expression module.

Authors:  Toshifumi Yae; Ken Tajima; Shyamala Maheswaran
Journal:  Cell Cycle       Date:  2016-02-11       Impact factor: 4.534

Review 7.  The Emerging Role of Epigenetics in the Regulation of Female Puberty.

Authors:  Alejandro Lomniczi; Sergio R Ojeda
Journal:  Endocr Dev       Date:  2015-12-17

8.  Structural Insight into Recognition of Methylated Histone H3K4 by Set3.

Authors:  Jovylyn Gatchalian; Muzaffar Ali; Forest H Andrews; Yi Zhang; Alexander S Barrett; Tatiana G Kutateladze
Journal:  J Mol Biol       Date:  2016-09-30       Impact factor: 5.469

Review 9.  Enhancer deregulation in cancer and other diseases.

Authors:  Hans-Martin Herz
Journal:  Bioessays       Date:  2016-08-29       Impact factor: 4.345

10.  A New Chromatin-Cytoskeleton Link in Cancer.

Authors:  Amato J Giaccia
Journal:  Mol Cancer Res       Date:  2016-08-15       Impact factor: 5.852

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