Literature DB >> 22549955

Codependency of H2B monoubiquitination and nucleosome reassembly on Chd1.

Jung-Shin Lee1, Alexander S Garrett, Kuangyu Yen, Yoh-Hei Takahashi, Deqing Hu, Jessica Jackson, Christopher Seidel, B Franklin Pugh, Ali Shilatifard.   

Abstract

Monoubiquitination of histone H2B on Lys 123 (H2BK123ub) is a transient histone modification considered to be essential for establishing H3K4 and H3K79 trimethylation by Set1/COMPASS and Dot1, respectively. Here, we identified Chd1 as a factor that is required for the maintenance of high levels of H2B monoubiquitination, but not for H3K4 and H3K79 trimethylation. Loss of Chd1 results in a substantial loss of H2BK123ub levels with little to no effect on the genome-wide pattern of H3K4 and H3K79 trimethylation. Our data show that nucleosomal occupancy is reduced in gene bodies in both chd1Δ and, as has been shown, K123A mutant backgrounds. We also demonstrated that Chd1's function in maintaining H2BK123ub levels is conserved from yeast to humans. Our study provides evidence that only small levels of H2BK123ub are necessary for full levels of H3K4 and H3K79 trimethylation in vivo and points to a possible role for Chd1 in positively regulating gene expression through promoting nucleosome reassembly coupled with H2B monoubiquitination.

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Year:  2012        PMID: 22549955      PMCID: PMC3347789          DOI: 10.1101/gad.186841.112

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  29 in total

1.  The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation.

Authors:  Nevan J Krogan; Jim Dover; Adam Wood; Jessica Schneider; Jonathan Heidt; Marry Ann Boateng; Kimberly Dean; Owen W Ryan; Ashkan Golshani; Mark Johnston; Jack F Greenblatt; Ali Shilatifard
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

2.  Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter.

Authors:  Adam Wood; Nevan J Krogan; Jim Dover; Jessica Schneider; Jonathan Heidt; Marry Ann Boateng; Kimberly Dean; Ashkan Golshani; Yi Zhang; Jack F Greenblatt; Mark Johnston; Ali Shilatifard
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

3.  The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p.

Authors:  Adam Wood; Jessica Schneider; Jim Dover; Mark Johnston; Ali Shilatifard
Journal:  J Biol Chem       Date:  2003-07-21       Impact factor: 5.157

4.  Global proteomic analysis of S. cerevisiae (GPS) to identify proteins required for histone modifications.

Authors:  Jessica Schneider; Jim Dover; Mark Johnston; Ali Shilatifard
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

5.  The Bur1/Bur2 complex is required for histone H2B monoubiquitination by Rad6/Bre1 and histone methylation by COMPASS.

Authors:  Adam Wood; Jessica Schneider; Jim Dover; Mark Johnston; Ali Shilatifard
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

6.  Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.

Authors:  Rushad Pavri; Bing Zhu; Guohong Li; Patrick Trojer; Subhrangsu Mandal; Ali Shilatifard; Danny Reinberg
Journal:  Cell       Date:  2006-05-19       Impact factor: 41.582

7.  Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains.

Authors:  Robert J Sims; Chi-Fu Chen; Helena Santos-Rosa; Tony Kouzarides; Smita S Patel; Danny Reinberg
Journal:  J Biol Chem       Date:  2005-10-31       Impact factor: 5.157

8.  A conserved RING finger protein required for histone H2B monoubiquitination and cell size control.

Authors:  William W Hwang; Shivkumar Venkatasubrahmanyam; Alexandra G Ianculescu; Amy Tong; Charles Boone; Hiten D Madhani
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

9.  Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast.

Authors:  Zu-Wen Sun; C David Allis
Journal:  Nature       Date:  2002-06-23       Impact factor: 49.962

10.  Methylation of histone H3 by COMPASS requires ubiquitination of histone H2B by Rad6.

Authors:  Jim Dover; Jessica Schneider; Mary Anne Tawiah-Boateng; Adam Wood; Kimberly Dean; Mark Johnston; Ali Shilatifard
Journal:  J Biol Chem       Date:  2002-06-17       Impact factor: 5.157

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  42 in total

1.  The Mediator subunit MED23 couples H2B mono-ubiquitination to transcriptional control and cell fate determination.

Authors:  Xiao Yao; Zhanyun Tang; Xing Fu; Jingwen Yin; Yan Liang; Chonghui Li; Huayun Li; Qing Tian; Robert G Roeder; Gang Wang
Journal:  EMBO J       Date:  2015-09-01       Impact factor: 11.598

2.  PAF1, a Molecular Regulator of Promoter-Proximal Pausing by RNA Polymerase II.

Authors:  Fei Xavier Chen; Ashley R Woodfin; Alessandro Gardini; Ryan A Rickels; Stacy A Marshall; Edwin R Smith; Ramin Shiekhattar; Ali Shilatifard
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

3.  A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast.

Authors:  Inbal Gazy; Batia Liefshitz; Alex Bronstein; Oren Parnas; Nir Atias; Roded Sharan; Martin Kupiec
Journal:  G3 (Bethesda)       Date:  2013-05-20       Impact factor: 3.154

Review 4.  Nucleosome positioning in yeasts: methods, maps, and mechanisms.

Authors:  Corinna Lieleg; Nils Krietenstein; Maria Walker; Philipp Korber
Journal:  Chromosoma       Date:  2014-12-23       Impact factor: 4.316

Review 5.  Histone exchange, chromatin structure and the regulation of transcription.

Authors:  Swaminathan Venkatesh; Jerry L Workman
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

Review 6.  Transcription-associated histone modifications and cryptic transcription.

Authors:  Michaela Smolle; Jerry L Workman
Journal:  Biochim Biophys Acta       Date:  2012-09-07

Review 7.  Chromatin dynamics: interplay between remodeling enzymes and histone modifications.

Authors:  Sarah G Swygert; Craig L Peterson
Journal:  Biochim Biophys Acta       Date:  2014-02-28

8.  The U4/U6 recycling factor SART3 has histone chaperone activity and associates with USP15 to regulate H2B deubiquitination.

Authors:  Lindsey Long; Joseph P Thelen; Melonnie Furgason; Mahmood Haj-Yahya; Ashraf Brik; Dongmei Cheng; Junmin Peng; Tingting Yao
Journal:  J Biol Chem       Date:  2014-02-13       Impact factor: 5.157

9.  The histone H4 basic patch regulates SAGA-mediated H2B deubiquitination and histone acetylation.

Authors:  Hashem A Meriesh; Andrew M Lerner; Mahesh B Chandrasekharan; Brian D Strahl
Journal:  J Biol Chem       Date:  2020-04-03       Impact factor: 5.157

Review 10.  WEE1 tyrosine kinase, a novel epigenetic modifier.

Authors:  Kiran Mahajan; Nupam P Mahajan
Journal:  Trends Genet       Date:  2013-03-26       Impact factor: 11.639

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