Literature DB >> 20379172

A global map of human gene expression.

Margus Lukk, Misha Kapushesky, Janne Nikkilä, Helen Parkinson, Angela Goncalves, Wolfgang Huber, Esko Ukkonen, Alvis Brazma.   

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Year:  2010        PMID： 20379172      PMCID： PMC2974261          DOI： 10.1038/nbt0410-322

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  12 in total

1.  Creation and implications of a phenome-genome network.

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Journal:  Nat Biotechnol       Date:  2006-01       Impact factor: 54.908

2.  The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.

Authors:  Leming Shi; Laura H Reid; Wendell D Jones; Richard Shippy; Janet A Warrington; Shawn C Baker; Patrick J Collins; Francoise de Longueville; Ernest S Kawasaki; Kathleen Y Lee; Yuling Luo; Yongming Andrew Sun; James C Willey; Robert A Setterquist; Gavin M Fischer; Weida Tong; Yvonne P Dragan; David J Dix; Felix W Frueh; Frederico M Goodsaid; Damir Herman; Roderick V Jensen; Charles D Johnson; Edward K Lobenhofer; Raj K Puri; Uwe Schrf; Jean Thierry-Mieg; Charles Wang; Mike Wilson; Paul K Wolber; Lu Zhang; Shashi Amur; Wenjun Bao; Catalin C Barbacioru; Anne Bergstrom Lucas; Vincent Bertholet; Cecilie Boysen; Bud Bromley; Donna Brown; Alan Brunner; Roger Canales; Xiaoxi Megan Cao; Thomas A Cebula; James J Chen; Jing Cheng; Tzu-Ming Chu; Eugene Chudin; John Corson; J Christopher Corton; Lisa J Croner; Christopher Davies; Timothy S Davison; Glenda Delenstarr; Xutao Deng; David Dorris; Aron C Eklund; Xiao-hui Fan; Hong Fang; Stephanie Fulmer-Smentek; James C Fuscoe; Kathryn Gallagher; Weigong Ge; Lei Guo; Xu Guo; Janet Hager; Paul K Haje; Jing Han; Tao Han; Heather C Harbottle; Stephen C Harris; Eli Hatchwell; Craig A Hauser; Susan Hester; Huixiao Hong; Patrick Hurban; Scott A Jackson; Hanlee Ji; Charles R Knight; Winston P Kuo; J Eugene LeClerc; Shawn Levy; Quan-Zhen Li; Chunmei Liu; Ying Liu; Michael J Lombardi; Yunqing Ma; Scott R Magnuson; Botoul Maqsodi; Tim McDaniel; Nan Mei; Ola Myklebost; Baitang Ning; Natalia Novoradovskaya; Michael S Orr; Terry W Osborn; Adam Papallo; Tucker A Patterson; Roger G Perkins; Elizabeth H Peters; Ron Peterson; Kenneth L Philips; P Scott Pine; Lajos Pusztai; Feng Qian; Hongzu Ren; Mitch Rosen; Barry A Rosenzweig; Raymond R Samaha; Mark Schena; Gary P Schroth; Svetlana Shchegrova; Dave D Smith; Frank Staedtler; Zhenqiang Su; Hongmei Sun; Zoltan Szallasi; Zivana Tezak; Danielle Thierry-Mieg; Karol L Thompson; Irina Tikhonova; Yaron Turpaz; Beena Vallanat; Christophe Van; Stephen J Walker; Sue Jane Wang; Yonghong Wang; Russ Wolfinger; Alex Wong; Jie Wu; Chunlin Xiao; Qian Xie; Jun Xu; Wen Yang; Liang Zhang; Sheng Zhong; Yaping Zong; William Slikker
Journal:  Nat Biotechnol       Date:  2006-09       Impact factor: 54.908

3.  Dynamism in gene expression across multiple studies.

Authors:  Alexander A Morgan; Joel T Dudley; Tarangini Deshpande; Atul J Butte
Journal:  Physiol Genomics       Date:  2009-11-17       Impact factor: 3.107

4.  Large-scale analysis of the human and mouse transcriptomes.

Authors:  Andrew I Su; Michael P Cooke; Keith A Ching; Yaron Hakak; John R Walker; Tim Wiltshire; Anthony P Orth; Raquel G Vega; Lisa M Sapinoso; Aziz Moqrich; Ardem Patapoutian; Garret M Hampton; Peter G Schultz; John B Hogenesch
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5.  Celsius: a community resource for Affymetrix microarray data.

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6.  A gene atlas of the mouse and human protein-encoding transcriptomes.

Authors:  Andrew I Su; Tim Wiltshire; Serge Batalov; Hilmar Lapp; Keith A Ching; David Block; Jie Zhang; Richard Soden; Mimi Hayakawa; Gabriel Kreiman; Michael P Cooke; John R Walker; John B Hogenesch
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Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

8.  Transcriptional profiling of mouse and human ES cells identifies SLAIN1, a novel stem cell gene.

Authors:  Claire E Hirst; Elizabeth S Ng; Lisa Azzola; Anne K Voss; Tim Thomas; Edouard G Stanley; Andrew G Elefanty
Journal:  Dev Biol       Date:  2006-03-20       Impact factor: 3.582

9.  Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues.

Authors:  Sami Kilpinen; Reija Autio; Kalle Ojala; Kristiina Iljin; Elmar Bucher; Henri Sara; Tommi Pisto; Matti Saarela; Rolf I Skotheim; Mari Björkman; John-Patrick Mpindi; Saija Haapa-Paananen; Paula Vainio; Henrik Edgren; Maija Wolf; Jaakko Astola; Matthias Nees; Sampsa Hautaniemi; Olli Kallioniemi
Journal:  Genome Biol       Date:  2008-09-19       Impact factor: 13.583

10.  ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression.

Authors:  Helen Parkinson; Misha Kapushesky; Nikolay Kolesnikov; Gabriella Rustici; Mohammad Shojatalab; Niran Abeygunawardena; Hugo Berube; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Ele Holloway; Margus Lukk; James Malone; Roby Mani; Ekaterina Pilicheva; Tim F Rayner; Faisal Rezwan; Anjan Sharma; Eleanor Williams; Xiangqun Zheng Bradley; Tomasz Adamusiak; Marco Brandizi; Tony Burdett; Richard Coulson; Maria Krestyaninova; Pavel Kurnosov; Eamonn Maguire; Sudeshna Guha Neogi; Philippe Rocca-Serra; Susanna-Assunta Sansone; Nataliya Sklyar; Mengyao Zhao; Ugis Sarkans; Alvis Brazma
Journal:  Nucleic Acids Res       Date:  2008-11-10       Impact factor: 16.971
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  169 in total

1.  Few inputs can reprogram biological networks.

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2.  Making sense out of massive data by going beyond differential expression.

Authors:  Patrick R Schmid; Nathan P Palmer; Isaac S Kohane; Bonnie Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-23       Impact factor: 11.205

3.  Towards a knowledge-based Human Protein Atlas.

Authors:  Mathias Uhlen; Per Oksvold; Linn Fagerberg; Emma Lundberg; Kalle Jonasson; Mattias Forsberg; Martin Zwahlen; Caroline Kampf; Kenneth Wester; Sophia Hober; Henrik Wernerus; Lisa Björling; Fredrik Ponten
Journal:  Nat Biotechnol       Date:  2010-12       Impact factor: 54.908

4.  Bayesian inference with historical data-based informative priors improves detection of differentially expressed genes.

Authors:  Ben Li; Zhaonan Sun; Qing He; Yu Zhu; Zhaohui S Qin
Journal:  Bioinformatics       Date:  2015-10-30       Impact factor: 6.937

5.  A tissue-specific atlas of mouse protein phosphorylation and expression.

Authors:  Edward L Huttlin; Mark P Jedrychowski; Joshua E Elias; Tapasree Goswami; Ramin Rad; Sean A Beausoleil; Judit Villén; Wilhelm Haas; Mathew E Sowa; Steven P Gygi
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

6.  Large scale comparison of global gene expression patterns in human and mouse.

Authors:  Xiangqun Zheng-Bradley; Johan Rung; Helen Parkinson; Alvis Brazma
Journal:  Genome Biol       Date:  2010-12-23       Impact factor: 13.583

7.  Redefining the relevance of established cancer cell lines to the study of mechanisms of clinical anti-cancer drug resistance.

Authors:  Jean-Pierre Gillet; Anna Maria Calcagno; Sudhir Varma; Miguel Marino; Lisa J Green; Meena I Vora; Chirayu Patel; Josiah N Orina; Tatiana A Eliseeva; Vineet Singal; Raji Padmanabhan; Ben Davidson; Ram Ganapathi; Anil K Sood; Bo R Rueda; Suresh V Ambudkar; Michael M Gottesman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-08       Impact factor: 11.205

8.  Beegle: from literature mining to disease-gene discovery.

Authors:  Sarah ElShal; Léon-Charles Tranchevent; Alejandro Sifrim; Amin Ardeshirdavani; Jesse Davis; Yves Moreau
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

Review 9.  Trafficking of epidermal growth factor receptor ligands in polarized epithelial cells.

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Journal:  Annu Rev Physiol       Date:  2013-11-08       Impact factor: 19.318

10.  Chemical inhibition of prometastatic lysyl-tRNA synthetase-laminin receptor interaction.

Authors:  Dae Gyu Kim; Jin Young Lee; Nam Hoon Kwon; Pengfei Fang; Qian Zhang; Jing Wang; Nicolas L Young; Min Guo; Hye Young Cho; Ameeq Ul Mushtaq; Young Ho Jeon; Jin Woo Choi; Jung Min Han; Ho Woong Kang; Jae Eun Joo; Youn Hur; Wonyoung Kang; Heekyoung Yang; Do-Hyun Nam; Mi-Sook Lee; Jung Weon Lee; Eun-Sook Kim; Aree Moon; Kibom Kim; Doyeun Kim; Eun Joo Kang; Youngji Moon; Kyung Hee Rhee; Byung Woo Han; Jee Sun Yang; Gyoonhee Han; Won Suk Yang; Cheolju Lee; Ming-Wei Wang; Sunghoon Kim
Journal:  Nat Chem Biol       Date:  2013-11-10       Impact factor: 15.040
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