Literature DB >> 21124490

Abundances and potential activities of nitrogen cycling microbial communities along a chronosequence of a glacier forefield.

Robert Brankatschk1, Stefanie Töwe, Kristina Kleineidam, Michael Schloter, Josef Zeyer.   

Abstract

Glacier forefields are ideal ecosystems to study the development of nutrient cycles as well as single turnover processes during soil development. In this study, we examined the ecology of the microbial nitrogen (N) cycle in bulk soil samples from a chronosequence of the Damma glacier, Switzerland. Major processes of the N cycle were reconstructed on the genetic as well as the potential enzyme activity level at sites of the chronosequence that have been ice-free for 10, 50, 70, 120 and 2000 years. In our study, we focused on N fixation, mineralization (chitinolysis and proteolysis), nitrification and denitrification. Our results suggest that mineralization, mainly the decomposition of deposited organic material, was the main driver for N turnover in initial soils, that is, ice-free for 10 years. Transient soils being ice-free for 50 and 70 years were characterized by a high abundance of N fixing microorganisms. In developed soils, ice-free for 120 and 2000 years, significant rates of nitrification and denitrification were measured. Surprisingly, copy numbers of the respective functional genes encoding the corresponding enzymes were already high in the initial phase of soil development. This clearly indicates that the genetic potential is not the driver for certain functional traits in the initial phase of soil formation but rather a well-balanced expression of the respective genes coding for selected functions.

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Year:  2010        PMID: 21124490      PMCID: PMC3131848          DOI: 10.1038/ismej.2010.184

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  39 in total

1.  Comparison of methods for quantification of cytochrome cd(1)-denitrifying bacteria in environmental marine samples.

Authors:  V Michotey; V Méjean; P Bonin
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

Review 2.  Nitrogenase gene diversity and microbial community structure: a cross-system comparison.

Authors:  Jonathan P Zehr; Bethany D Jenkins; Steven M Short; Grieg F Steward
Journal:  Environ Microbiol       Date:  2003-07       Impact factor: 5.491

3.  Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil.

Authors:  Christopher Rösch; Alexander Mergel; Hermann Bothe
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

4.  PCR primers and functional probes for amplification and detection of bacterial genes for extracellular peptidases in single strains and in soil.

Authors:  H J Bach; A Hartmann; M Schloter; J C Munch
Journal:  J Microbiol Methods       Date:  2001-03-01       Impact factor: 2.363

5.  Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling.

Authors:  Alexander H Treusch; Sven Leininger; Arnulf Kletzin; Stephan C Schuster; Hans-Peter Klenk; Christa Schleper
Journal:  Environ Microbiol       Date:  2005-12       Impact factor: 5.491

6.  Chitinase genes in lake sediments of Ardley Island, Antarctica.

Authors:  Xiang Xiao; Xuebin Yin; Jian Lin; Liguang Sun; Ziyong You; Peng Wang; Fengping Wang
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

7.  Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands.

Authors:  G A Kowalchuk; A W Stienstra; G H Heilig; J R Stephen; J W Woldendorp
Journal:  Environ Microbiol       Date:  2000-02       Impact factor: 5.491

8.  Quantification of denitrifying bacteria in soils by nirK gene targeted real-time PCR.

Authors:  Sonia Henry; Ezékiel Baudoin; Juan C López-Gutiérrez; Fabrice Martin-Laurent; Alain Brauman; Laurent Philippot
Journal:  J Microbiol Methods       Date:  2004-12       Impact factor: 2.363

9.  Microbial diversity and activity along the forefields of two receding glaciers.

Authors:  W V Sigler; J Zeyer
Journal:  Microb Ecol       Date:  2002-04-15       Impact factor: 4.552

10.  Bacterial succession in glacial forefield soils characterized by community structure, activity and opportunistic growth dynamics.

Authors:  W V Sigler; S Crivii; J Zeyer
Journal:  Microb Ecol       Date:  2002-10-29       Impact factor: 4.552

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  40 in total

1.  Disconnect of microbial structure and function: enzyme activities and bacterial communities in nascent stream corridors.

Authors:  Aline Frossard; Linda Gerull; Michael Mutz; Mark O Gessner
Journal:  ISME J       Date:  2011-10-27       Impact factor: 10.302

2.  Freeze-coring method for characterization of microbial community structure and function in wetland soils at high spatial resolution.

Authors:  Alessandro G Franchini; Josef Zeyer
Journal:  Appl Environ Microbiol       Date:  2012-04-06       Impact factor: 4.792

3.  Field-scale transplantation experiment to investigate structures of soil bacterial communities at pioneering sites.

Authors:  Anna Lazzaro; Andreas Gauer; Josef Zeyer
Journal:  Appl Environ Microbiol       Date:  2011-09-30       Impact factor: 4.792

4.  Molecular Ecology of nifH Genes and Transcripts Along a Chronosequence in Revegetated Areas of the Tengger Desert.

Authors:  Jin Wang; Jing-Ting Bao; Xin-Rong Li; Yu-Bing Liu
Journal:  Microb Ecol       Date:  2015-08-16       Impact factor: 4.552

5.  Potential sources of microbial colonizers in an initial soil ecosystem after retreat of an alpine glacier.

Authors:  Thomas Rime; Martin Hartmann; Beat Frey
Journal:  ISME J       Date:  2016-01-15       Impact factor: 10.302

6.  Microbial abundance and community structure in a melting alpine snowpack.

Authors:  Anna Lazzaro; Andrea Wismer; Martin Schneebeli; Isolde Erny; Josef Zeyer
Journal:  Extremophiles       Date:  2015-03-18       Impact factor: 2.395

7.  Temporal Variations in Diazotrophic Communities and nifH Transcripts Level Across the Agricultural and Fallow Land at Jaipur, Rajasthan, India.

Authors:  Sushma Sharma; Dileep K Singh
Journal:  Indian J Microbiol       Date:  2016-12-10       Impact factor: 2.461

8.  Bacterial community structure on two alpine debris-covered glaciers and biogeography of Polaromonas phylotypes.

Authors:  Andrea Franzetti; Valeria Tatangelo; Isabella Gandolfi; Valentina Bertolini; Giuseppina Bestetti; Guglielmina Diolaiuti; Carlo D'Agata; Claudia Mihalcea; Claudio Smiraglia; Roberto Ambrosini
Journal:  ISME J       Date:  2013-03-28       Impact factor: 10.302

9.  The dynamic bacterial communities of a melting High Arctic glacier snowpack.

Authors:  Katherina Hell; Arwyn Edwards; Jakub Zarsky; Sabine M Podmirseg; Susan Girdwood; Justin A Pachebat; Heribert Insam; Birgit Sattler
Journal:  ISME J       Date:  2013-04-04       Impact factor: 10.302

10.  Distribution of Prokaryotic Abundance and Microbial Nutrient Cycling Across a High-Alpine Altitudinal Gradient in the Austrian Central Alps is Affected by Vegetation, Temperature, and Soil Nutrients.

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Journal:  Microb Ecol       Date:  2016-07-11       Impact factor: 4.552

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