Literature DB >> 21095156

Genome mining for ribosomally synthesized natural products.

Juan E Velásquez1, Wilfred A van der Donk.   

Abstract

In recent years, the number of known peptide natural products that are synthesized via the ribosomal pathway has rapidly grown. Taking advantage of sequence homology among genes encoding precursor peptides or biosynthetic proteins, in silico mining of genomes combined with molecular biology approaches has guided the discovery of a large number of new ribosomal natural products, including lantipeptides, cyanobactins, linear thiazole/oxazole-containing peptides, microviridins, lasso peptides, amatoxins, cyclotides, and conopeptides. In this review, we describe the strategies used for the identification of these ribosomally synthesized and posttranslationally modified peptides (RiPPs) and the structures of newly identified compounds. The increasing number of chemical entities and their remarkable structural and functional diversity may lead to novel pharmaceutical applications.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21095156      PMCID: PMC3090663          DOI: 10.1016/j.cbpa.2010.10.027

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  72 in total

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4.  Discovery of cyclotide-like protein sequences in graminaceous crop plants: ancestral precursors of circular proteins?

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Journal:  Plant Cell       Date:  2006-08-25       Impact factor: 11.277

5.  Diversity and evolution of conotoxins based on gene expression profiling of Conus litteratus.

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Journal:  Genomics       Date:  2006-08-14       Impact factor: 5.736

6.  Discovery and in vitro biosynthesis of haloduracin, a two-component lantibiotic.

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8.  Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians.

Authors:  Mohamed S Donia; Brian J Hathaway; Sebastian Sudek; Margo G Haygood; M J Rosovitz; Jacques Ravel; Eric W Schmidt
Journal:  Nat Chem Biol       Date:  2006-11-05       Impact factor: 15.040

9.  Expansion of ribosomally produced natural products: a nitrile hydratase- and Nif11-related precursor family.

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  60 in total

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Review 2.  Circular proteins from plants and fungi.

Authors:  Ulf Göransson; Robert Burman; Sunithi Gunasekera; Adam A Strömstedt; K Johan Rosengren
Journal:  J Biol Chem       Date:  2012-06-14       Impact factor: 5.157

Review 3.  Prospecting genomes for lasso peptides.

Authors:  Mikhail O Maksimov; A James Link
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-19       Impact factor: 3.346

4.  Facile Removal of Leader Peptides from Lanthipeptides by Incorporation of a Hydroxy Acid.

Authors:  Noah A Bindman; Silvia C Bobeica; Wenshe R Liu; Wilfred A van der Donk
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5.  Characterization of the macrocyclase involved in the biosynthesis of RiPP cyclic peptides in plants.

Authors:  Jonathan R Chekan; Paola Estrada; Patrick S Covello; Satish K Nair
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-05       Impact factor: 11.205

Review 6.  Mechanistic Understanding of Lanthipeptide Biosynthetic Enzymes.

Authors:  Lindsay M Repka; Jonathan R Chekan; Satish K Nair; Wilfred A van der Donk
Journal:  Chem Rev       Date:  2017-01-30       Impact factor: 60.622

7.  Activation of band 3 mediates group A Streptococcus streptolysin S-based beta-haemolysis.

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Journal:  Nat Microbiol       Date:  2016-01-18       Impact factor: 17.745

8.  Characterization of Methanobactin from Methylosinus sp. LW4.

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Review 9.  Cyclotides, a versatile ultrastable micro-protein scaffold for biotechnological applications.

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Journal:  Bioorg Med Chem Lett       Date:  2017-10-21       Impact factor: 2.823

10.  Evolution of lanthipeptide synthetases.

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