Literature DB >> 21080262

Half-filter experiments for assignment, structure determination and hydration analysis of unlabelled ligands bound to 13C/15N labelled proteins.

C Dalvit1, S Cottens, P Ramage, U Hommel.   

Abstract

A novel variant of the 13C/15N ω2 half-filter experiment is reported for studying the hydration of an unlabelled ligand bound to a 15N and 13C uniformly labelled biological macromolecule. This doubly tuned filter experiment represents a powerful tool for obtaining resonance assignments, structure determination and hydration properties of a ligand. Its application to the binary complex formed by the inserted-domain (I-domain) of the leukocyte function-associated antigen-1 (LFA-1) with a ligand reveals the presence of H2O molecules at the binding interface.

Entities:  

Year:  1999        PMID: 21080262     DOI: 10.1023/A:1008345330011

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  21 in total

Review 1.  Heteronuclear filters in two-dimensional [1H,1H]-NMR spectroscopy: combined use with isotope labelling for studies of macromolecular conformation and intermolecular interactions.

Authors:  G Otting; K Wüthrich
Journal:  Q Rev Biophys       Date:  1990-02       Impact factor: 5.318

2.  A study of protein-water exchange through the off-resonance ROESY experiment: application to the DNA-binding domain of AlcR.

Authors:  N Birlirakis; R Cerdan; E Guittet
Journal:  J Biomol NMR       Date:  1996-12       Impact factor: 2.835

3.  Separation of intramolecular NOE and exchange peaks in water exchange spectroscopy using spin-echo filters.

Authors:  S Mori; J M Berg; P C van Zijl
Journal:  J Biomol NMR       Date:  1996-01       Impact factor: 2.835

4.  A (13)C double-filtered NOESY with strongly reduced artefacts and improved sensitivity.

Authors:  R H Folmer; C W Hilbers; R N Konings; K Hallenga
Journal:  J Biomol NMR       Date:  1995-06       Impact factor: 2.835

Review 5.  Pulsed-field gradients: theory and practice.

Authors:  J Keeler; R T Clowes; A L Davis; E D Laue
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

6.  Identification and localization of bound internal water in the solution structure of interleukin 1 beta by heteronuclear three-dimensional 1H rotating-frame Overhauser 15N-1H multiple quantum coherence NMR spectroscopy.

Authors:  G M Clore; A Bax; P T Wingfield; A M Gronenborn
Journal:  Biochemistry       Date:  1990-06-19       Impact factor: 3.162

7.  Conformation of two non-immunosuppressive FK506 analogs when bound to FKBP by isotope-filtered NMR.

Authors:  A M Petros; M Kawai; J R Luly; S W Fesik
Journal:  FEBS Lett       Date:  1992-08-24       Impact factor: 4.124

8.  Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics.

Authors:  V P Chuprina; J A Rullmann; R M Lamerichs; J H van Boom; R Boelens; R Kaptein
Journal:  J Mol Biol       Date:  1993-11-20       Impact factor: 5.469

9.  A pulsed field gradient isotope-filtered 3D 13C HMQC-NOESY experiment for extracting intermolecular NOE contacts in molecular complexes.

Authors:  W Lee; M J Revington; C Arrowsmith; L E Kay
Journal:  FEBS Lett       Date:  1994-08-15       Impact factor: 4.124

10.  Conservation of water molecules in an antibody-antigen interaction.

Authors:  B C Braden; B A Fields; R J Poljak
Journal:  J Mol Recognit       Date:  1995 Sep-Oct       Impact factor: 2.137

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  5 in total

1.  WaterLOGSY as a method for primary NMR screening: practical aspects and range of applicability.

Authors:  C Dalvit; G Fogliatto; A Stewart; M Veronesi; B Stockman
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

2.  Measurement of homonuclear three-bond J(H(N)Halpha) coupling constants in unlabeled peptides complexed with labeled proteins: application to a decapeptide inhibitor bound to the proteinase domain of the NS3 protein of hepatitis C virus (HCV).

Authors:  D O Cicero; G Barbato; U Koch; P Ingallinella; E Bianchi; S Sambucini; P Neddermann; R De Francesco; A Pessi; R Bazzo
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

3.  Simultaneous measurement of intra- and intermolecular NOEs in differentially labeled protein-ligand complexes.

Authors:  C Eichmüller; W Schüler; R Konrat; B Kräutler
Journal:  J Biomol NMR       Date:  2001-10       Impact factor: 2.835

4.  Mapping the ligand binding site at protein side-chains in protein-ligand complexes through NOE difference spectroscopy.

Authors:  C Eichmüller; M Tollinger; B Kräutler; R Konrat
Journal:  J Biomol NMR       Date:  2001-07       Impact factor: 2.835

5.  Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water.

Authors:  C Dalvit; P Pevarello; M Tatò; M Veronesi; A Vulpetti; M Sundström
Journal:  J Biomol NMR       Date:  2000-09       Impact factor: 2.835

  5 in total

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