Literature DB >> 21075614

Membrane protein folding: how important are hydrogen bonds?

James U Bowie1.   

Abstract

Water is an inhospitable environment for protein hydrogen bonds because it is polarizable and capable of forming competitive hydrogen bonds. In contrast, the apolar core of a biological membrane seems like an ideal environment for hydrogen bonds, and it has long been assumed that hydrogen bonding should be a powerful force driving membrane protein folding. Nevertheless, while backbone hydrogen bonds may be much stronger in membrane proteins, experimental measurements indicate that side chain hydrogen bond strengths are not strikingly different in membrane and water soluble proteins. How is this possible? I argue that model compounds in apolar solvents do not adequately describe the system because the protein itself is ignored. The protein chain provides a rich source of competitive hydrogen bonds and a polarizable environment that can weaken hydrogen bonds. Thus, just like water soluble proteins, evolution can drive the creation of potent hydrogen bonds in membrane proteins where necessary, but mitigating forces in their environment must still be overcome.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21075614      PMCID: PMC3073540          DOI: 10.1016/j.sbi.2010.10.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  61 in total

1.  Energetics of a hydrogen bond (charged and neutral) and of a cation-pi interaction in apoflavodoxin.

Authors:  J Fernández-Recio; A Romero; J Sancho
Journal:  J Mol Biol       Date:  1999-07-02       Impact factor: 5.469

2.  Understanding membrane protein structure by design.

Authors:  J U Bowie
Journal:  Nat Struct Biol       Date:  2000-02

3.  The enthalpy of the alanine peptide helix measured by isothermal titration calorimetry using metal-binding to induce helix formation.

Authors:  Maria M Lopez; Der-Hang Chin; Robert L Baldwin; George I Makhatadze
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-29       Impact factor: 11.205

4.  The Calpha ---H...O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions.

Authors:  A Senes; I Ubarretxena-Belandia; D M Engelman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

5.  Hydrophobic organization of membrane proteins.

Authors:  D C Rees; L DeAntonio; D Eisenberg
Journal:  Science       Date:  1989-08-04       Impact factor: 47.728

6.  Transmembrane glycine zippers: physiological and pathological roles in membrane proteins.

Authors:  Sanguk Kim; Tae-Joon Jeon; Amit Oberai; Duan Yang; Jacob J Schmidt; James U Bowie
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-22       Impact factor: 11.205

7.  A double-deletion method to quantifying incremental binding energies in proteins from experiment: example of a destabilizing hydrogen bonding pair.

Authors:  Luis A Campos; Santiago Cuesta-López; Jon López-Llano; Fernando Falo; Javier Sancho
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

8.  Amide-to-E-olefin versus amide-to-ester backbone H-bond perturbations: Evaluating the O-O repulsion for extracting H-bond energies.

Authors:  Yanwen Fu; Jianmin Gao; Jan Bieschke; Maria A Dendle; Jeffery W Kelly
Journal:  J Am Chem Soc       Date:  2006-12-20       Impact factor: 15.419

Review 9.  Molecular mechanisms for the assembly of the T cell receptor-CD3 complex.

Authors:  Matthew E Call; Kai W Wucherpfennig
Journal:  Mol Immunol       Date:  2004-04       Impact factor: 4.407

10.  Strong hydrogen bonding interactions involving a buried glutamic acid in the transmembrane sequence of the neu/erbB-2 receptor.

Authors:  S O Smith; C S Smith; B J Bormann
Journal:  Nat Struct Biol       Date:  1996-03
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  63 in total

1.  Shifting hydrogen bonds may produce flexible transmembrane helices.

Authors:  Zheng Cao; James U Bowie
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-07       Impact factor: 11.205

2.  Sequential steps in the assembly of the multimeric outer membrane secretin PulD.

Authors:  Gerard H M Huysmans; Ingrid Guilvout; Anthony P Pugsley
Journal:  J Biol Chem       Date:  2013-09-09       Impact factor: 5.157

3.  The FRET signatures of noninteracting proteins in membranes: simulations and experiments.

Authors:  Christopher King; Sarvenaz Sarabipour; Patrick Byrne; Daniel J Leahy; Kalina Hristova
Journal:  Biophys J       Date:  2014-03-18       Impact factor: 4.033

4.  A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations.

Authors:  Zongan Wang; John M Jumper; Sheng Wang; Karl F Freed; Tobin R Sosnick
Journal:  Biophys J       Date:  2018-10-23       Impact factor: 4.033

5.  Membrane protein native state discrimination by implicit membrane models.

Authors:  Olga Yuzlenko; Themis Lazaridis
Journal:  J Comput Chem       Date:  2012-12-07       Impact factor: 3.376

6.  Membrane physical properties influence transmembrane helix formation.

Authors:  Francisco N Barrera; Justin Fendos; Donald M Engelman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

7.  More than the sum of its parts: coarse-grained peptide-lipid interactions from a simple cross-parametrization.

Authors:  Tristan Bereau; Zun-Jing Wang; Markus Deserno
Journal:  J Chem Phys       Date:  2014-03-21       Impact factor: 3.488

8.  Structural organization of FtsB, a transmembrane protein of the bacterial divisome.

Authors:  Loren M LaPointe; Keenan C Taylor; Sabareesh Subramaniam; Ambalika Khadria; Ivan Rayment; Alessandro Senes
Journal:  Biochemistry       Date:  2013-04-04       Impact factor: 3.162

9.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

Review 10.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

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