Literature DB >> 21071452

Location of glycine mutations within a bacterial collagen protein affects degree of disruption of triple-helix folding and conformation.

Haiming Cheng1, Shayan Rashid, Zhuoxin Yu, Ayumi Yoshizumi, Eileen Hwang, Barbara Brodsky.   

Abstract

The hereditary bone disorder osteogenesis imperfecta is often caused by missense mutations in type I collagen that change one Gly residue to a larger residue and that break the typical (Gly-Xaa-Yaa)(n) sequence pattern. Site-directed mutagenesis in a recombinant bacterial collagen system was used to explore the effects of the Gly mutation position and of the identity of the residue replacing Gly in a homogeneous collagen molecular population. Homotrimeric bacterial collagen proteins with a Gly-to-Arg or Gly-to-Ser replacement formed stable triple-helix molecules with a reproducible 2 °C decrease in stability. All Gly replacements led to a significant delay in triple-helix folding, but a more dramatic delay was observed when the mutation was located near the N terminus of the triple-helix domain. This highly disruptive mutation, close to the globular N-terminal trimerization domain where folding is initiated, is likely to interfere with triple-helix nucleation. A positional effect of mutations was also suggested by trypsin sensitivity for a Gly-to-Arg replacement close to the triple-helix N terminus but not for the same replacement near the center of the molecule. The significant impact of the location of a mutation on triple-helix folding and conformation could relate to the severe consequences of mutations located near the C terminus of type I and type III collagens, where trimerization occurs and triple-helix folding is initiated.

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Year:  2010        PMID: 21071452      PMCID: PMC3023501          DOI: 10.1074/jbc.M110.153965

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  26 in total

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Authors:  P H Byers
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2001-02-28       Impact factor: 6.237

2.  Equilibrium thermal transitions of collagen model peptides.

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3.  Noncollagenous region of the streptococcal collagen-like protein is a trimerization domain that supports refolding of adjacent homologous and heterologous collagenous domains.

Authors:  Zhuoxin Yu; Oleg Mirochnitchenko; Chunying Xu; Ayumi Yoshizumi; Barbara Brodsky; Masayori Inouye
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

4.  Folding and conformational consequences of glycine to alanine replacements at different positions in a collagen model peptide.

Authors:  Manjiri Bhate; Xin Wang; Jean Baum; Barbara Brodsky
Journal:  Biochemistry       Date:  2002-05-21       Impact factor: 3.162

5.  Proteolytic enzymes as probes for the triple-helical conformation of procollagen.

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Journal:  Anal Biochem       Date:  1981-01-15       Impact factor: 3.365

6.  Destabilization of osteogenesis imperfecta collagen-like model peptides correlates with the identity of the residue replacing glycine.

Authors:  K Beck; V C Chan; N Shenoy; A Kirkpatrick; J A Ramshaw; B Brodsky
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

7.  Streptococcal Scl1 and Scl2 proteins form collagen-like triple helices.

Authors:  Yi Xu; Douglas R Keene; Janusz M Bujnicki; Magnus Höök; Slawomir Lukomski
Journal:  J Biol Chem       Date:  2002-04-25       Impact factor: 5.157

8.  Subtle structural alterations in the chains of type I procollagen produce osteogenesis imperfecta type II.

Authors:  J Bonadio; P H Byers
Journal:  Nature       Date:  1985 Jul 25-31       Impact factor: 49.962

Review 9.  Collagens, modifying enzymes and their mutations in humans, flies and worms.

Authors:  Johanna Myllyharju; Kari I Kivirikko
Journal:  Trends Genet       Date:  2004-01       Impact factor: 11.639

10.  Osteogenesis imperfecta. The position of substitution for glycine by cysteine in the triple helical domain of the pro alpha 1(I) chains of type I collagen determines the clinical phenotype.

Authors:  B J Starman; D Eyre; H Charbonneau; M Harrylock; M A Weis; L Weiss; J M Graham; P H Byers
Journal:  J Clin Invest       Date:  1989-10       Impact factor: 14.808

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  9 in total

1.  Folding delay and structural perturbations caused by type IV collagen natural interruptions and nearby Gly missense mutations.

Authors:  Eileen S Hwang; Barbara Brodsky
Journal:  J Biol Chem       Date:  2011-12-16       Impact factor: 5.157

2.  Osteogenesis imperfecta model peptides: incorporation of residues replacing Gly within a triple helix achieved by renucleation and local flexibility.

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3.  Discovering design principles of collagen molecular stability using a genetic algorithm, deep learning, and experimental validation.

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4.  ColGen: An end-to-end deep learning model to predict thermal stability of de novo collagen sequences.

Authors:  Chi-Hua Yu; Eesha Khare; Om Prakash Narayan; Rachael Parker; David L Kaplan; Markus J Buehler
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5.  Bacterial collagen-like proteins that form triple-helical structures.

Authors:  Zhuoxin Yu; Bo An; John A M Ramshaw; Barbara Brodsky
Journal:  J Struct Biol       Date:  2014-01-14       Impact factor: 2.867

6.  Direct detection of collagenous proteins by fluorescently labeled collagen mimetic peptides.

Authors:  Yang Li; Daniel Ho; Huan Meng; Tania R Chan; Bo An; Hanry Yu; Barbara Brodsky; Albert S Jun; S Michael Yu
Journal:  Bioconjug Chem       Date:  2013-01-03       Impact factor: 4.774

Review 7.  Collagen Mimetic Peptides.

Authors:  Yujia Xu; Michele Kirchner
Journal:  Bioengineering (Basel)       Date:  2021-01-05

8.  Defining requirements for collagenase cleavage in collagen type III using a bacterial collagen system.

Authors:  Zhuoxin Yu; Robert Visse; Masayori Inouye; Hideaki Nagase; Barbara Brodsky
Journal:  J Biol Chem       Date:  2012-05-09       Impact factor: 5.157

9.  Ultrastructural analysis of the decellularized cornea after interlamellar keratoplasty and microkeratome-assisted anterior lamellar keratoplasty in a rabbit model.

Authors:  Yoshihide Hashimoto; Shinya Hattori; Shuji Sasaki; Takako Honda; Tsuyoshi Kimura; Seiichi Funamoto; Hisatoshi Kobayashi; Akio Kishida
Journal:  Sci Rep       Date:  2016-06-13       Impact factor: 4.379

  9 in total

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