Literature DB >> 15010541

Equilibrium thermal transitions of collagen model peptides.

Anton V Persikov1, Yujia Xu, Barbara Brodsky.   

Abstract

The folding of collagen in vitro is very slow and presents difficulties in reaching equilibrium, a feature that may have implications for in vivo collagen function. Peptides serve as good model systems for examining equilibrium thermal transitions in the collagen triple helix. Investigations were carried out to ascertain whether a range of synthetic triple-helical peptides of varying sequences can reach equilibrium, and whether the triple helix to unfolded monomer transition approximates a two-state model. The thermal transitions for all peptides studied are fully reversible given sufficient time. Isothermal experiments were carried out to obtain relaxation times at different temperatures. The slowest relaxation times, on the order of 10-15 h, were observed at the beginning of transitions, and were shown to result from self-association limited by the low concentration of free monomers, rather than cis-trans isomerization. Although the fit of the CD equilibrium transition curves and the concentration dependence of T(m) values support a two-state model, the more rigorous comparison of the calorimetric enthalpy to the van't Hoff enthalpy indicates the two-state approximation is not ideal. Previous reports of melting curves of triple-helical host-guest peptides are shown to be a two-state kinetic transition, rather than an equilibrium transition.

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Year:  2004        PMID: 15010541      PMCID: PMC2280063          DOI: 10.1110/ps.03501704

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  38 in total

1.  Collagen-based structures containing the peptoid residue N-isobutylglycine (Nleu): synthesis and biophysical studies of Gly-Nleu-Pro sequences by circular dichroism and optical rotation.

Authors:  Y Feng; G Melacini; M Goodman
Journal:  Biochemistry       Date:  1997-07-22       Impact factor: 3.162

Review 2.  The zipper-like folding of collagen triple helices and the effects of mutations that disrupt the zipper.

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Journal:  Annu Rev Biophys Biophys Chem       Date:  1991

3.  Gly-Gly-containing triplets of low stability adjacent to a type III collagen epitope.

Authors:  N K Shah; M Sharma; A Kirkpatrick; J A Ramshaw; B Brodsky
Journal:  Biochemistry       Date:  1997-05-13       Impact factor: 3.162

4.  Two-dimensional NMR assignments and conformation of (Pro-Hyp-Gly)10 and a designed collagen triple-helical peptide.

Authors:  M H Li; P Fan; B Brodsky; J Baum
Journal:  Biochemistry       Date:  1993-07-27       Impact factor: 3.162

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Journal:  Eur J Biochem       Date:  1980-05

7.  Peptide investigations of pairwise interactions in the collagen triple-helix.

Authors:  Anton V Persikov; John A M Ramshaw; Alan Kirkpatrick; Barbara Brodsky
Journal:  J Mol Biol       Date:  2002-02-15       Impact factor: 5.469

Review 8.  Molecular recognition in procollagen chain assembly.

Authors:  S H McLaughlin; N J Bulleid
Journal:  Matrix Biol       Date:  1998-02       Impact factor: 11.583

Review 9.  Collagen mimetics.

Authors:  M Goodman; E A Jefferson; J Kwak; E Locardi
Journal:  Biopolymers       Date:  1998       Impact factor: 2.505

10.  Characterization of collagen model peptides containing 4-fluoroproline; (4(S)-fluoroproline-pro-gly)10 forms a triple helix, but (4(R)-fluoroproline-pro-gly)10 does not.

Authors:  Masamitsu Doi; Yoshinori Nishi; Susumu Uchiyama; Yuji Nishiuchi; Takashi Nakazawa; Tadayasu Ohkubo; Yuji Kobayashi
Journal:  J Am Chem Soc       Date:  2003-08-20       Impact factor: 15.419

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  55 in total

1.  Folding delay and structural perturbations caused by type IV collagen natural interruptions and nearby Gly missense mutations.

Authors:  Eileen S Hwang; Barbara Brodsky
Journal:  J Biol Chem       Date:  2011-12-16       Impact factor: 5.157

2.  Kinetic hysteresis in collagen folding.

Authors:  Kazunori Mizuno; Sergei P Boudko; Jürgen Engel; Hans Peter Bächinger
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

3.  Interruptions in the collagen repeating tripeptide pattern can promote supramolecular association.

Authors:  Eileen S Hwang; Geetha Thiagarajan; Avanish S Parmar; Barbara Brodsky
Journal:  Protein Sci       Date:  2010-05       Impact factor: 6.725

4.  Location of glycine mutations within a bacterial collagen protein affects degree of disruption of triple-helix folding and conformation.

Authors:  Haiming Cheng; Shayan Rashid; Zhuoxin Yu; Ayumi Yoshizumi; Eileen Hwang; Barbara Brodsky
Journal:  J Biol Chem       Date:  2010-11-11       Impact factor: 5.157

5.  UV damage of collagen: insights from model collagen peptides.

Authors:  Ketevan Jariashvili; Balaraman Madhan; Barbara Brodsky; Ana Kuchava; Louisa Namicheishvili; Nunu Metreveli
Journal:  Biopolymers       Date:  2011-10-15       Impact factor: 2.505

6.  Evaluation of conformation and association behavior of multivalent alanine-rich polypeptides.

Authors:  Robin S Farmer; Ayben Top; Lindsey M Argust; Shuang Liu; Kristi L Kiick
Journal:  Pharm Res       Date:  2007-08-03       Impact factor: 4.200

7.  Triple-helical transition state analogues: a new class of selective matrix metalloproteinase inhibitors.

Authors:  Janelle Lauer-Fields; Keith Brew; John K Whitehead; Shunzi Li; Robert P Hammer; Gregg B Fields
Journal:  J Am Chem Soc       Date:  2007-08-02       Impact factor: 15.419

8.  Analysis of the kinetics of folding of proteins and peptides using circular dichroism.

Authors:  Norma J Greenfield
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

9.  Matrix metalloproteinase inhibition by heterotrimeric triple-helical Peptide transition state analogues.

Authors:  Manishabrata Bhowmick; Roma Stawikowska; Dorota Tokmina-Roszyk; Gregg B Fields
Journal:  Chembiochem       Date:  2015-03-12       Impact factor: 3.164

10.  Microwave-assisted synthesis of triple-helical, collagen-mimetic lipopeptides.

Authors:  Jayati Banerjee; Andrea J Hanson; Wallace W Muhonen; John B Shabb; Sanku Mallik
Journal:  Nat Protoc       Date:  2009-12-17       Impact factor: 13.491

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