Literature DB >> 31733726

NMR Reveals Light-Induced Changes in the Dynamics of a Photoswitchable Fluorescent Protein.

Nina-Eleni Christou1, Isabel Ayala1, Karine Giandoreggio-Barranco1, Martin Byrdin1, Virgile Adam1, Dominique Bourgeois1, Bernhard Brutscher2.   

Abstract

The availability of fluorescent proteins with distinct phototransformation properties is crucial for a wide range of applications in advanced fluorescence microscopy and biotechnology. To rationally design new variants optimized for specific applications, a detailed understanding of the mechanistic features underlying phototransformation is essential. At present, little is known about the conformational dynamics of fluorescent proteins at physiological temperature and how these dynamics contribute to the observed phototransformation properties. Here, we apply high-resolution NMR spectroscopy in solution combined with in situ sample illumination at different wavelengths to investigate the conformational dynamics of rsFolder, a GFP-derived protein that can be reversibly switched between a green fluorescent state and a nonfluorescent state. Our results add a dynamic view to the static structures obtained by x-ray crystallography. Including a custom-tailored NMR toolbox in fluorescent protein research provides new opportunities for investigating the effect of mutations or changes in the environmental conditions on the conformational dynamics of phototransformable fluorescent proteins and their correlation with the observed photochemical and photophysical properties.
Copyright © 2019 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Year:  2019        PMID: 31733726      PMCID: PMC6895687          DOI: 10.1016/j.bpj.2019.10.035

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  46 in total

1.  Slow exchange in the chromophore of a green fluorescent protein variant.

Authors:  Markus H J Seifert; Dorota Ksiazek; M Kamran Azim; Pawel Smialowski; Nediljko Budisa; Tad A Holak
Journal:  J Am Chem Soc       Date:  2002-07-10       Impact factor: 15.419

2.  Nonlinear structured-illumination microscopy with a photoswitchable protein reveals cellular structures at 50-nm resolution.

Authors:  E Hesper Rego; Lin Shao; John J Macklin; Lukman Winoto; Göran A Johansson; Nicholas Kamps-Hughes; Michael W Davidson; Mats G L Gustafsson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

3.  Engineering and characterization of a superfolder green fluorescent protein.

Authors:  Jean-Denis Pédelacq; Stéphanie Cabantous; Timothy Tran; Thomas C Terwilliger; Geoffrey S Waldo
Journal:  Nat Biotechnol       Date:  2005-12-20       Impact factor: 54.908

4.  Light-dependent regulation of structural flexibility in a photochromic fluorescent protein.

Authors:  Hideaki Mizuno; Tapas Kumar Mal; Markus Wälchli; Akihiro Kikuchi; Takashi Fukano; Ryoko Ando; Jeyaraman Jeyakanthan; Junichiro Taka; Yoshitsugu Shiro; Mitsuhiko Ikura; Atsushi Miyawaki
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-23       Impact factor: 11.205

5.  SOFAST-HMQC experiments for recording two-dimensional heteronuclear correlation spectra of proteins within a few seconds.

Authors:  Paul Schanda; Eriks Kupce; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

6.  Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein.

Authors:  R M Wachter; M A Elsliger; K Kallio; G T Hanson; S J Remington
Journal:  Structure       Date:  1998-10-15       Impact factor: 5.006

7.  Backbone dynamics of ribonuclease T1 and its complex with 2'GMP studied by two-dimensional heteronuclear NMR spectroscopy.

Authors:  D Fushman; R Weisemann; H Thüring; H Rüterjans
Journal:  J Biomol NMR       Date:  1994-01       Impact factor: 2.835

8.  Secondary and tertiary structural effects on protein NMR chemical shifts: an ab initio approach.

Authors:  A C de Dios; J G Pearson; E Oldfield
Journal:  Science       Date:  1993-06-04       Impact factor: 47.728

9.  The CCPN data model for NMR spectroscopy: development of a software pipeline.

Authors:  Wim F Vranken; Wayne Boucher; Tim J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John L Markley; John Ionides; Ernest D Laue
Journal:  Proteins       Date:  2005-06-01

10.  Crystal structure of enhanced green fluorescent protein to 1.35 Å resolution reveals alternative conformations for Glu222.

Authors:  James A J Arpino; Pierre J Rizkallah; D Dafydd Jones
Journal:  PLoS One       Date:  2012-10-16       Impact factor: 3.240

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