Literature DB >> 21030644

Molecular signals of epigenetic states.

Roberto Bonasio1, Shengjiang Tu, Danny Reinberg.   

Abstract

Epigenetic signals are responsible for the establishment, maintenance, and reversal of metastable transcriptional states that are fundamental for the cell's ability to "remember" past events, such as changes in the external environment or developmental cues. Complex epigenetic states are orchestrated by several converging and reinforcing signals, including transcription factors, noncoding RNAs, DNA methylation, and histone modifications. Although all of these pathways modulate transcription from chromatin in vivo, the mechanisms by which epigenetic information is transmitted through cell division remain unclear. Because epigenetic states are metastable and change in response to the appropriate signals, a deeper understanding of their molecular framework will allow us to tackle the dysregulation of epigenetics in disease.

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Year:  2010        PMID: 21030644      PMCID: PMC3772643          DOI: 10.1126/science.1191078

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  78 in total

Review 1.  Chromatin modifications and their function.

Authors:  Tony Kouzarides
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 2.  The role of chromatin during transcription.

Authors:  Bing Li; Michael Carey; Jerry L Workman
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

3.  SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster.

Authors:  Sharmistha Kundu; Peter J Horn; Craig L Peterson
Journal:  Genes Dev       Date:  2007-04-15       Impact factor: 11.361

4.  Perceptions of epigenetics.

Authors:  Adrian Bird
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

5.  Dissecting direct reprogramming through integrative genomic analysis.

Authors:  Tarjei S Mikkelsen; Jacob Hanna; Xiaolan Zhang; Manching Ku; Marius Wernig; Patrick Schorderet; Bradley E Bernstein; Rudolf Jaenisch; Eric S Lander; Alexander Meissner
Journal:  Nature       Date:  2008-05-28       Impact factor: 49.962

Review 6.  The colorful history of active DNA demethylation.

Authors:  Steen K T Ooi; Timothy H Bestor
Journal:  Cell       Date:  2008-06-27       Impact factor: 41.582

7.  Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins.

Authors:  Bernadett Papp; Jürg Müller
Journal:  Genes Dev       Date:  2006-08-01       Impact factor: 11.361

8.  Relationship between histone H3 lysine 9 methylation, transcription repression, and heterochromatin protein 1 recruitment.

Authors:  M David Stewart; Jiwen Li; Jiemin Wong
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

9.  Intergenic transcription through a polycomb group response element counteracts silencing.

Authors:  Sabine Schmitt; Matthias Prestel; Renato Paro
Journal:  Genes Dev       Date:  2005-03-01       Impact factor: 11.361

10.  Stability of triple helices containing RNA and DNA strands: experimental and molecular modeling studies.

Authors:  C Escudé; J C François; J S Sun; G Ott; M Sprinzl; T Garestier; C Hélène
Journal:  Nucleic Acids Res       Date:  1993-12-11       Impact factor: 16.971

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  356 in total

Review 1.  Genome regulation by long noncoding RNAs.

Authors:  John L Rinn; Howard Y Chang
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

2.  Understanding the first steps in embryonic stem cell exit from the pluripotent state.

Authors:  C John Luckey; Yu Lu; Jarrod A Marto
Journal:  Transfusion       Date:  2011-11       Impact factor: 3.157

Review 3.  Breaking Symmetry - Asymmetric Histone Inheritance in Stem Cells.

Authors:  Jing Xie; Matthew Wooten; Vuong Tran; Xin Chen
Journal:  Trends Cell Biol       Date:  2017-03-06       Impact factor: 20.808

Review 4.  DNA methylation: an epigenetic risk factor in preterm birth.

Authors:  Ramkumar Menon; Karen N Conneely; Alicia K Smith
Journal:  Reprod Sci       Date:  2012-01       Impact factor: 3.060

5.  Uncovering the role of genomic "dark matter" in human disease.

Authors:  Lance Martin; Howard Y Chang
Journal:  J Clin Invest       Date:  2012-05-01       Impact factor: 14.808

Review 6.  Basic concepts of epigenetics: impact of environmental signals on gene expression.

Authors:  Elizabeth A Mazzio; Karam F A Soliman
Journal:  Epigenetics       Date:  2012-02       Impact factor: 4.528

7.  Memory Sequencing Reveals Heritable Single-Cell Gene Expression Programs Associated with Distinct Cellular Behaviors.

Authors:  Sydney M Shaffer; Benjamin L Emert; Raúl A Reyes Hueros; Christopher Cote; Guillaume Harmange; Dylan L Schaff; Ann E Sizemore; Rohit Gupte; Eduardo Torre; Abhyudai Singh; Danielle S Bassett; Arjun Raj
Journal:  Cell       Date:  2020-07-30       Impact factor: 41.582

8.  Epigenetic changes through DNA methylation contribute to uterine stromal cell decidualization.

Authors:  Fei Gao; Xinghong Ma; Allison Rusie; Jennifer Hemingway; Alicia B Ostmann; Daesuk Chung; Sanjoy K Das
Journal:  Endocrinology       Date:  2012-10-02       Impact factor: 4.736

9.  Jumonji C domain protein JMJ705-mediated removal of histone H3 lysine 27 trimethylation is involved in defense-related gene activation in rice.

Authors:  Tiantian Li; Xiangsong Chen; Xiaochao Zhong; Yu Zhao; Xiaoyun Liu; Shaoli Zhou; Saifeng Cheng; Dao-Xiu Zhou
Journal:  Plant Cell       Date:  2013-11-26       Impact factor: 11.277

Review 10.  Epigenetics and chromatin dynamics: a review and a paradigm for functional disorders.

Authors:  T Ordog; S A Syed; Y Hayashi; D T Asuzu
Journal:  Neurogastroenterol Motil       Date:  2012-10-24       Impact factor: 3.598

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