Literature DB >> 17438002

SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster.

Sharmistha Kundu1, Peter J Horn, Craig L Peterson.   

Abstract

Post-translational modification of nucleosomal histones has been suggested to contribute to epigenetic transcriptional memory. We describe a case of transcriptional memory in yeast where the rate of transcriptional induction of GAL1 is regulated by the prior expression state. This epigenetic state is inherited by daughter cells, but does not require the histone acetyltransferase, Gcn5p, the histone ubiquitinylating enzyme, Rad6p, or the histone methylases, Dot1p, Set1p, or Set2p. In contrast, we show that the ATP-dependent chromatin remodeling enzyme, SWI/SNF, is essential for transcriptional memory at GAL1. Genetic studies indicate that SWI/SNF controls transcriptional memory by antagonizing ISWI-like chromatin remodeling enzymes.

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Year:  2007        PMID: 17438002      PMCID: PMC1847716          DOI: 10.1101/gad.1506607

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  40 in total

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Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

Review 2.  Promoter targeting and chromatin remodeling by the SWI/SNF complex.

Authors:  C L Peterson; J L Workman
Journal:  Curr Opin Genet Dev       Date:  2000-04       Impact factor: 5.578

3.  Distinct classes of yeast promoters revealed by differential TAF recruitment.

Authors:  X Y Li; S R Bhaumik; M R Green
Journal:  Science       Date:  2000-05-19       Impact factor: 47.728

4.  Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.

Authors:  Brian D Strahl; Patrick A Grant; Scott D Briggs; Zu-Wen Sun; James R Bone; Jennifer A Caldwell; Sahana Mollah; Richard G Cook; Jeffrey Shabanowitz; Donald F Hunt; C David Allis
Journal:  Mol Cell Biol       Date:  2002-03       Impact factor: 4.272

Review 5.  Heterochromatin: new possibilities for the inheritance of structure.

Authors:  Shiv I S Grewal; Sarah C R Elgin
Journal:  Curr Opin Genet Dev       Date:  2002-04       Impact factor: 5.578

6.  SAGA is an essential in vivo target of the yeast acidic activator Gal4p.

Authors:  S R Bhaumik; M R Green
Journal:  Genes Dev       Date:  2001-08-01       Impact factor: 11.361

7.  The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4.

Authors:  A Roguev; D Schaft; A Shevchenko; W W Pijnappel; M Wilm; R Aasland; A F Stewart
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

8.  The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4.

Authors:  E Larschan; F Winston
Journal:  Genes Dev       Date:  2001-08-01       Impact factor: 11.361

9.  Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression.

Authors:  T G Fazzio; C Kooperberg; J P Goldmark; C Neal; R Basom; J Delrow; T Tsukiyama
Journal:  Mol Cell Biol       Date:  2001-10       Impact factor: 4.272

10.  Identification of multiple distinct Snf2 subfamilies with conserved structural motifs.

Authors:  Andrew Flaus; David M A Martin; Geoffrey J Barton; Tom Owen-Hughes
Journal:  Nucleic Acids Res       Date:  2006-05-31       Impact factor: 16.971

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  73 in total

Review 1.  The nuclear pore complex: bridging nuclear transport and gene regulation.

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Journal:  Nat Rev Mol Cell Biol       Date:  2010-07       Impact factor: 94.444

2.  Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation.

Authors:  Qihuang Jin; Li-Rong Yu; Lifeng Wang; Zhijing Zhang; Lawryn H Kasper; Ji-Eun Lee; Chaochen Wang; Paul K Brindle; Sharon Y R Dent; Kai Ge
Journal:  EMBO J       Date:  2010-12-03       Impact factor: 11.598

Review 3.  Transcriptional regulation at the yeast nuclear envelope.

Authors:  Babett Steglich; Shelley Sazer; Karl Ekwall
Journal:  Nucleus       Date:  2013-09-06       Impact factor: 4.197

Review 4.  Control of eukaryotic gene expression: gene loops and transcriptional memory.

Authors:  Michael Hampsey; Badri Nath Singh; Athar Ansari; Jean-Philippe Lainé; Shankarling Krishnamurthy
Journal:  Adv Enzyme Regul       Date:  2010-10-29

5.  A novel mechanism of antagonism between ATP-dependent chromatin remodeling complexes regulates RNR3 expression.

Authors:  Raghuvir S Tomar; James N Psathas; Hesheng Zhang; Zhengjian Zhang; Joseph C Reese
Journal:  Mol Cell Biol       Date:  2009-04-06       Impact factor: 4.272

6.  BRG1-mediated chromatin remodeling regulates differentiation and gene expression of T helper cells.

Authors:  Andrea L Wurster; Michael J Pazin
Journal:  Mol Cell Biol       Date:  2008-10-13       Impact factor: 4.272

7.  Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex.

Authors:  Sue Mei Tan-Wong; Hashanthi D Wijayatilake; Nick J Proudfoot
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

Review 8.  Role of chromatin states in transcriptional memory.

Authors:  Sharmistha Kundu; Craig L Peterson
Journal:  Biochim Biophys Acta       Date:  2009-02-21

9.  Different Mechanisms Confer Gradual Control and Memory at Nutrient- and Stress-Regulated Genes in Yeast.

Authors:  Alessandro Rienzo; Daniel Poveda-Huertes; Selcan Aydin; Nicolas E Buchler; Amparo Pascual-Ahuir; Markus Proft
Journal:  Mol Cell Biol       Date:  2015-08-17       Impact factor: 4.272

Review 10.  Transcriptional memory at the nuclear periphery.

Authors:  Jason H Brickner
Journal:  Curr Opin Cell Biol       Date:  2009-01-30       Impact factor: 8.382

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