Literature DB >> 24006468

Patterns and processes of microbial community assembly.

Diana R Nemergut1, Steven K Schmidt, Tadashi Fukami, Sean P O'Neill, Teresa M Bilinski, Lee F Stanish, Joseph E Knelman, John L Darcy, Ryan C Lynch, Phillip Wickey, Scott Ferrenberg.   

Abstract

Recent research has expanded our understanding of microbial community assembly. However, the field of community ecology is inaccessible to many microbial ecologists because of inconsistent and often confusing terminology as well as unnecessarily polarizing debates. Thus, we review recent literature on microbial community assembly, using the framework of Vellend (Q. Rev. Biol. 85:183-206, 2010) in an effort to synthesize and unify these contributions. We begin by discussing patterns in microbial biogeography and then describe four basic processes (diversification, dispersal, selection, and drift) that contribute to community assembly. We also discuss different combinations of these processes and where and when they may be most important for shaping microbial communities. The spatial and temporal scales of microbial community assembly are also discussed in relation to assembly processes. Throughout this review paper, we highlight differences between microbes and macroorganisms and generate hypotheses describing how these differences may be important for community assembly. We end by discussing the implications of microbial assembly processes for ecosystem function and biodiversity.

Mesh:

Year:  2013        PMID: 24006468      PMCID: PMC3811611          DOI: 10.1128/MMBR.00051-12

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   11.056


  112 in total

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2.  The frequency and characteristics of highly thermophilic bacteria in cool soil environments.

Authors:  Roger Marchant; Ibrahim M Banat; Thahira J Rahman; Marco Berzano
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3.  Assembly history dictates ecosystem functioning: evidence from wood decomposer communities.

Authors:  Tadashi Fukami; Ian A Dickie; J Paula Wilkie; Barbara C Paulus; Duckchul Park; Andrea Roberts; Peter K Buchanan; Robert B Allen
Journal:  Ecol Lett       Date:  2010-04-16       Impact factor: 9.492

4.  Dormancy contributes to the maintenance of microbial diversity.

Authors:  Stuart E Jones; Jay T Lennon
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

5.  Balance of neutral and deterministic components in the dynamics of activated sludge floc assembly.

Authors:  Joaquín M Ayarza; Leonardo Erijman
Journal:  Microb Ecol       Date:  2010-10-23       Impact factor: 4.552

Review 6.  Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes.

Authors:  Martin F Polz; Dana E Hunt; Sarah P Preheim; Daniel M Weinreich
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-11-29       Impact factor: 6.237

7.  Colloquium paper: resistance, resilience, and redundancy in microbial communities.

Authors:  Steven D Allison; Jennifer B H Martiny
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-11       Impact factor: 11.205

8.  Adaptive radiation in a heterogeneous environment.

Authors:  P B Rainey; M Travisano
Journal:  Nature       Date:  1998-07-02       Impact factor: 49.962

9.  Communities as assembled structures: Do rules govern pattern?

Authors:  J A Drake
Journal:  Trends Ecol Evol       Date:  1990-05       Impact factor: 17.712

10.  Phylogenetic relatedness predicts priority effects in nectar yeast communities.

Authors:  Kabir G Peay; Melinda Belisle; Tadashi Fukami
Journal:  Proc Biol Sci       Date:  2011-07-20       Impact factor: 5.349

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  300 in total

1.  Climate change and physical disturbance cause similar community shifts in biological soil crusts.

Authors:  Scott Ferrenberg; Sasha C Reed; Jayne Belnap
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-14       Impact factor: 11.205

2.  Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers?

Authors:  Luciana F Santoferrara; Jean-David Grattepanche; Laura A Katz; George B McManus
Journal:  ISME J       Date:  2016-02-05       Impact factor: 10.302

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4.  Divergent Co-occurrence Patterns and Assembly Processes Structure the Abundant and Rare Bacterial Communities in a Salt Marsh Ecosystem.

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Journal:  Appl Environ Microbiol       Date:  2020-06-17       Impact factor: 4.792

5.  Interstrain interactions between bacteria isolated from vacuum-packaged refrigerated beef.

Authors:  Peipei Zhang; József Baranyi; Mark Tamplin
Journal:  Appl Environ Microbiol       Date:  2015-02-06       Impact factor: 4.792

6.  Litter quality versus soil microbial community controls over decomposition: a quantitative analysis.

Authors:  Cory C Cleveland; Sasha C Reed; Adrienne B Keller; Diana R Nemergut; Sean P O'Neill; Rebecca Ostertag; Peter M Vitousek
Journal:  Oecologia       Date:  2014-01       Impact factor: 3.225

7.  Dynamics in microbial communities: unraveling mechanisms to identify principles.

Authors:  Allan Konopka; Stephen Lindemann; Jim Fredrickson
Journal:  ISME J       Date:  2014-12-19       Impact factor: 10.302

8.  A traits-based test of the home-field advantage in mixed-species tree litter decomposition.

Authors:  Mark Davidson Jewell; Bill Shipley; Alain Paquette; Christian Messier; Peter B Reich
Journal:  Ann Bot       Date:  2015-07-10       Impact factor: 4.357

9.  Evolutionary and ecological consequences of gut microbial communities.

Authors:  Nancy A Moran; Howard Ochman; Tobin J Hammer
Journal:  Annu Rev Ecol Evol Syst       Date:  2019-08-29       Impact factor: 13.915

Review 10.  Understanding and Engineering Distributed Biochemical Pathways in Microbial Communities.

Authors:  Xinyun Cao; Joshua J Hamilton; Ophelia S Venturelli
Journal:  Biochemistry       Date:  2018-11-20       Impact factor: 3.162

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