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Literature DB >> 20963740

Real-time SNP analysis in secondary-structure-folded nucleic acids.

Jeffrey Grimes¹, Yulia V Gerasimova, Dmitry M Kolpashchikov.

Abstract

Entities: Chemical Disease Gene Species

Mesh：

Substances：

Year: 2010 PMID： 20963740 PMCID： PMC3017124 DOI： 10.1002/anie.201004475

Source DB: PubMed Journal: Angew Chem Int Ed Engl ISSN： 1433-7851 Impact factor: 15.336

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36 in total

Review 1. Strategies in complex disease mapping.

Authors: G C Johnson; J A Todd
Journal: Curr Opin Genet Dev Date: 2000-06 Impact factor: 5.578

Review 2. Single nucleotide polymorphisms and the future of genetic epidemiology.

Authors: N J Schork; D Fallin; J S Lanchbury
Journal: Clin Genet Date: 2000-10 Impact factor: 4.438

3. Effect of secondary structure on the thermodynamics and kinetics of PNA hybridization to DNA hairpins.

Authors: S A Kushon; J P Jordan; J L Seifert; H Nielsen; P E Nielsen; B A Armitage
Journal: J Am Chem Soc Date: 2001-11-07 Impact factor: 15.419

4. The structure of haplotype blocks in the human genome.

Authors: Stacey B Gabriel; Stephen F Schaffner; Huy Nguyen; Jamie M Moore; Jessica Roy; Brendan Blumenstiel; John Higgins; Matthew DeFelice; Amy Lochner; Maura Faggart; Shau Neen Liu-Cordero; Charles Rotimi; Adebowale Adeyemo; Richard Cooper; Ryk Ward; Eric S Lander; Mark J Daly; David Altshuler
Journal: Science Date: 2002-05-23 Impact factor: 47.728

Review 5. Genotyping as a tool to predict adverse drug reactions.

Authors: Cüneyt Güzey; Olav Spigset
Journal: Curr Top Med Chem Date: 2004 Impact factor: 3.295

6. Solution-phase detection of polynucleotides using interacting fluorescent labels and competitive hybridization.

Authors: L E Morrison; T C Halder; L M Stols
Journal: Anal Biochem Date: 1989-12 Impact factor: 3.365

7. Hybridization of DNA and PNA molecular beacons to single-stranded and double-stranded DNA targets.

Authors: Heiko Kuhn; Vadim V Demidov; James M Coull; Mark J Fiandaca; Brian D Gildea; Maxim D Frank-Kamenetskii
Journal: J Am Chem Soc Date: 2002-02-13 Impact factor: 15.419

8. Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer.

Authors: R A Cardullo; S Agrawal; C Flores; P C Zamecnik; D E Wolf
Journal: Proc Natl Acad Sci U S A Date: 1988-12 Impact factor: 11.205

9. Integrating common and rare genetic variation in diverse human populations.

Authors: David M Altshuler; Richard A Gibbs; Leena Peltonen; David M Altshuler; Richard A Gibbs; Leena Peltonen; Emmanouil Dermitzakis; Stephen F Schaffner; Fuli Yu; Leena Peltonen; Emmanouil Dermitzakis; Penelope E Bonnen; David M Altshuler; Richard A Gibbs; Paul I W de Bakker; Panos Deloukas; Stacey B Gabriel; Rhian Gwilliam; Sarah Hunt; Michael Inouye; Xiaoming Jia; Aarno Palotie; Melissa Parkin; Pamela Whittaker; Fuli Yu; Kyle Chang; Alicia Hawes; Lora R Lewis; Yanru Ren; David Wheeler; Richard A Gibbs; Donna Marie Muzny; Chris Barnes; Katayoon Darvishi; Matthew Hurles; Joshua M Korn; Kati Kristiansson; Charles Lee; Steven A McCarrol; James Nemesh; Emmanouil Dermitzakis; Alon Keinan; Stephen B Montgomery; Samuela Pollack; Alkes L Price; Nicole Soranzo; Penelope E Bonnen; Richard A Gibbs; Claudia Gonzaga-Jauregui; Alon Keinan; Alkes L Price; Fuli Yu; Verneri Anttila; Wendy Brodeur; Mark J Daly; Stephen Leslie; Gil McVean; Loukas Moutsianas; Huy Nguyen; Stephen F Schaffner; Qingrun Zhang; Mohammed J R Ghori; Ralph McGinnis; William McLaren; Samuela Pollack; Alkes L Price; Stephen F Schaffner; Fumihiko Takeuchi; Sharon R Grossman; Ilya Shlyakhter; Elizabeth B Hostetter; Pardis C Sabeti; Clement A Adebamowo; Morris W Foster; Deborah R Gordon; Julio Licinio; Maria Cristina Manca; Patricia A Marshall; Ichiro Matsuda; Duncan Ngare; Vivian Ota Wang; Deepa Reddy; Charles N Rotimi; Charmaine D Royal; Richard R Sharp; Changqing Zeng; Lisa D Brooks; Jean E McEwen
Journal: Nature Date: 2010-09-02 Impact factor: 49.962

Review 10. The impact of nucleic acid secondary structure on PNA hybridization.

Authors: Bruce A Armitage
Journal: Drug Discov Today Date: 2003-03-01 Impact factor: 7.851

15 in total

1. Molecular-beacon-based tricomponent probe for SNP analysis in folded nucleic acids.

Authors: Camha Nguyen; Jeffrey Grimes; Yulia V Gerasimova; Dmitry M Kolpashchikov
Journal: Chemistry Date: 2011-09-28 Impact factor: 5.236

2. DNA nanotechnology for nucleic acid analysis: DX motif-based sensor.

Authors: Dmitry M Kolpashchikov; Yulia V Gerasimova; Mohammad S Khan
Journal: Chembiochem Date: 2011-10-18 Impact factor: 3.164

3. Visual detection of rpoB mutations in rifampin-resistant Mycobacterium tuberculosis strains by use of an asymmetrically split peroxidase DNAzyme.

Authors: Minggang Deng; Shuo Feng; Fengling Luo; Shaoru Wang; Xiaoming Sun; Xiang Zhou; Xiao-Lian Zhang
Journal: J Clin Microbiol Date: 2012-08-08 Impact factor: 5.948

Real-time SNP analysis in secondary-structure-folded nucleic acids.

Review 1. Strategies in complex disease mapping.

Review 2. Single nucleotide polymorphisms and the future of genetic epidemiology.

3. Effect of secondary structure on the thermodynamics and kinetics of PNA hybridization to DNA hairpins.

4. The structure of haplotype blocks in the human genome.

Review 5. Genotyping as a tool to predict adverse drug reactions.

6. Solution-phase detection of polynucleotides using interacting fluorescent labels and competitive hybridization.

7. Hybridization of DNA and PNA molecular beacons to single-stranded and double-stranded DNA targets.

8. Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer.

9. Integrating common and rare genetic variation in diverse human populations.

Review 10. The impact of nucleic acid secondary structure on PNA hybridization.

1. Molecular-beacon-based tricomponent probe for SNP analysis in folded nucleic acids.

2. DNA nanotechnology for nucleic acid analysis: DX motif-based sensor.

3. Visual detection of rpoB mutations in rifampin-resistant Mycobacterium tuberculosis strains by use of an asymmetrically split peroxidase DNAzyme.

4. Cascade of deoxyribozymes for the colorimetric analysis of drug resistance in Mycobacterium tuberculosis.

5. Alphanumerical Visual Display Made of DNA Logic Gates for Drug Susceptibility Testing of Pathogens.

6. Detection of bacterial 16S rRNA using a molecular beacon-based X sensor.

7. DNA nanotechnology for nucleic acid analysis: multifunctional molecular DNA machine for RNA detection.

8. Toward a Rational Approach to Design Split G-Quadruplex Probes.

9. A Single Electrochemical Probe Used for Analysis of Multiple Nucleic Acid Sequences.

10. Molecular logic gates for DNA analysis: detection of rifampin resistance in M. tuberculosis DNA.