Literature DB >> 20947016

Crystal structure of group II chaperonin in the open state.

Yanwu Huo1, Zhongjun Hu, Kai Zhang, Li Wang, Yujia Zhai, Qiangjun Zhou, Gabe Lander, Jiang Zhu, Yongzhi He, Xiaoyun Pang, Wei Xu, Mark Bartlam, Zhiyang Dong, Fei Sun.   

Abstract

Thermosomes are group II chaperonins responsible for protein refolding in an ATP-dependent manner. Little is known regarding the conformational changes of thermosomes during their functional cycle due to a lack of high-resolution structure in the open state. Here, we report the first complete crystal structure of thermosome (rATcpnβ) in the open state from Acidianus tengchongensis. There is a ∼30° rotation of the apical and lid domains compared with the previous closed structure. Besides, the structure reveals a conspicuous hydrophobic patch in the lid domain, and residues locating in this patch are conserved across species. Both the closed and open forms of rATcpnβ were also reconstructed by electron microscopy (EM). Structural fitting revealed the detailed conformational change from the open to the closed state. Structural comparison as well as protease K digestion indicated only ATP binding without hydrolysis does not induce chamber closure of thermosome.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20947016      PMCID: PMC3048791          DOI: 10.1016/j.str.2010.07.009

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  48 in total

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Authors:  O Llorca; M G Smyth; J L Carrascosa; K R Willison; M Radermacher; S Steinbacher; J M Valpuesta
Journal:  Nat Struct Biol       Date:  1999-07

3.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
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4.  Three conformations of an archaeal chaperonin, TF55 from Sulfolobus shibatae.

Authors:  G Schoehn; E Quaite-Randall; J L Jiménez; A Joachimiak; H R Saibil
Journal:  J Mol Biol       Date:  2000-02-25       Impact factor: 5.469

5.  The Rossmann Fourier autoindexing algorithm in MOSFLM.

Authors:  H R Powell
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

6.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

7.  A cytoplasmic chaperonin that catalyzes beta-actin folding.

Authors:  Y Gao; J O Thomas; R L Chow; G H Lee; N J Cowan
Journal:  Cell       Date:  1992-06-12       Impact factor: 41.582

8.  Use of TLS parameters to model anisotropic displacements in macromolecular refinement.

Authors:  M D Winn; M N Isupov; G N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-01

9.  ATP binding is critical for the conformational change from an open to closed state in archaeal group II chaperonin.

Authors:  Ryo Iizuka; Takao Yoshida; Yasuhito Shomura; Kunio Miki; Tadashi Maruyama; Masafumi Odaka; Masafumi Yohda
Journal:  J Biol Chem       Date:  2003-08-14       Impact factor: 5.157

10.  Function in protein folding of TRiC, a cytosolic ring complex containing TCP-1 and structurally related subunits.

Authors:  J Frydman; E Nimmesgern; H Erdjument-Bromage; J S Wall; P Tempst; F U Hartl
Journal:  EMBO J       Date:  1992-12       Impact factor: 11.598

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  17 in total

Review 1.  Chaperone machines for protein folding, unfolding and disaggregation.

Authors:  Helen Saibil
Journal:  Nat Rev Mol Cell Biol       Date:  2013-09-12       Impact factor: 94.444

Review 2.  The Mechanism and Function of Group II Chaperonins.

Authors:  Tom Lopez; Kevin Dalton; Judith Frydman
Journal:  J Mol Biol       Date:  2015-04-30       Impact factor: 5.469

3.  Single-particle reconstruction using L(2)-gradient flow.

Authors:  Ming Li; Guoliang Xu; Carlos O S Sorzano; Fei Sun; Chandrajit L Bajaj
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4.  Mechanism of nucleotide sensing in group II chaperonins.

Authors:  Jose H Pereira; Corie Y Ralston; Nicholai R Douglas; Ramya Kumar; Tom Lopez; Ryan P McAndrew; Kelly M Knee; Jonathan A King; Judith Frydman; Paul D Adams
Journal:  EMBO J       Date:  2011-12-23       Impact factor: 11.598

5.  Flexible interwoven termini determine the thermal stability of thermosomes.

Authors:  Kai Zhang; Li Wang; Yanxin Liu; Kwok-Yan Chan; Xiaoyun Pang; Klaus Schulten; Zhiyang Dong; Fei Sun
Journal:  Protein Cell       Date:  2013-05-25       Impact factor: 14.870

6.  Single-molecule fluorescence polarization study of conformational change in archaeal group II chaperonin.

Authors:  Ryo Iizuka; Taro Ueno; Nobuhiro Morone; Takashi Funatsu
Journal:  PLoS One       Date:  2011-07-14       Impact factor: 3.240

7.  Symmetry-free cryo-EM structures of the chaperonin TRiC along its ATPase-driven conformational cycle.

Authors:  Yao Cong; Gunnar F Schröder; Anne S Meyer; Joanita Jakana; Boxue Ma; Matthew T Dougherty; Michael F Schmid; Stefanie Reissmann; Michael Levitt; Steven L Ludtke; Judith Frydman; Wah Chiu
Journal:  EMBO J       Date:  2011-11-01       Impact factor: 11.598

8.  ATP-triggered conformational changes delineate substrate-binding and -folding mechanics of the GroEL chaperonin.

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Journal:  Cell       Date:  2012-03-22       Impact factor: 41.582

9.  Structural analysis of the Sulfolobus solfataricus TF55β chaperonin by cryo-electron microscopy.

Authors:  Yi Cheng Zeng; Meghna Sobti; Alastair G Stewart
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-03-03       Impact factor: 1.056

10.  Transcription elongation factor GreA has functional chaperone activity.

Authors:  Kun Li; Tianyi Jiang; Bo Yu; Limin Wang; Chao Gao; Cuiqing Ma; Ping Xu; Yanhe Ma
Journal:  PLoS One       Date:  2012-12-12       Impact factor: 3.240

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