Literature DB >> 23709365

Flexible interwoven termini determine the thermal stability of thermosomes.

Kai Zhang1, Li Wang, Yanxin Liu, Kwok-Yan Chan, Xiaoyun Pang, Klaus Schulten, Zhiyang Dong, Fei Sun.   

Abstract

Group II chaperonins, which assemble as double-ring complexes, assist in the refolding of nascent peptides or denatured proteins in an ATP-dependent manner. The molecular mechanism of group II chaperonin assembly and thermal stability is yet to be elucidated. Here, we selected the group II chaperonins (cpn-α and cpn-β), also called thermosomes, from Acidianus tengchongensis and investigated their assembly and thermal stability. We found that the binding of ATP or its analogs contributed to the successful assembly of thermosomes and enhanced their thermal stabilities. Cpn-β is more thermally stable than cpn-α, while the thermal stability of the hetero thermosome cpn-αβ is intermediate. Cryo-electron microscopy reconstructions of cpn-α and cpn-β revealed the interwoven densities of their non-conserved flexible N/C-termini around the equatorial planes. The deletion or swapping of their termini and pH-dependent thermal stability assays revealed the key role of the termini electrostatic interactions in the assembly and thermal stability of the thermosomes.

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Year:  2013        PMID: 23709365      PMCID: PMC3740188          DOI: 10.1007/s13238-013-3026-9

Source DB:  PubMed          Journal:  Protein Cell        ISSN: 1674-800X            Impact factor:   14.870


  46 in total

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3.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

4.  A cytoplasmic chaperonin that catalyzes beta-actin folding.

Authors:  Y Gao; J O Thomas; R L Chow; G H Lee; N J Cowan
Journal:  Cell       Date:  1992-06-12       Impact factor: 41.582

5.  Distinct symmetry and limited peptide refolding activity of the thermosomes from the acidothermophilic archaea Acidianus tengchongensis S5(T).

Authors:  Li Wang; Zhong-jun Hu; Yuan-ming Luo; Yan-wu Huo; Qing Ma; Yong-zhi He; Yu-ying Zhang; Fei Sun; Zhi-yang Dong
Journal:  Biochem Biophys Res Commun       Date:  2010-02-01       Impact factor: 3.575

6.  Protein folding: inside the cage.

Authors:  R John Ellis
Journal:  Nature       Date:  2006-07-27       Impact factor: 49.962

7.  Thermofluor-based high-throughput stability optimization of proteins for structural studies.

Authors:  Ulrika B Ericsson; B Martin Hallberg; George T Detitta; Niek Dekker; Pär Nordlund
Journal:  Anal Biochem       Date:  2006-08-10       Impact factor: 3.365

8.  Contribution of the C-terminal region to the thermostability of the archaeal group II chaperonin from Thermococcus sp. strain KS-1.

Authors:  Takao Yoshida; Taro Kanzaki; Ryo Iizuka; Toshihiro Komada; Tamotsu Zako; Rintaro Suzuki; Tadashi Maruyama; Masafumi Yohda
Journal:  Extremophiles       Date:  2006-05-10       Impact factor: 2.395

9.  Applications of the molecular dynamics flexible fitting method.

Authors:  Leonardo G Trabuco; Eduard Schreiner; James Gumbart; Jen Hsin; Elizabeth Villa; Klaus Schulten
Journal:  J Struct Biol       Date:  2010-10-12       Impact factor: 2.867

10.  Chaperonin complex with a newly folded protein encapsulated in the folding chamber.

Authors:  D K Clare; P J Bakkes; H van Heerikhuizen; S M van der Vies; H R Saibil
Journal:  Nature       Date:  2009-01-01       Impact factor: 49.962

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  6 in total

Review 1.  The Mechanism and Function of Group II Chaperonins.

Authors:  Tom Lopez; Kevin Dalton; Judith Frydman
Journal:  J Mol Biol       Date:  2015-04-30       Impact factor: 5.469

2.  Constructing atomic structural models into cryo-EM densities using molecular dynamics - Pros and cons.

Authors:  Yuhang Wang; Mrinal Shekhar; Darren Thifault; Christopher J Williams; Ryan McGreevy; Jane Richardson; Abhishek Singharoy; Emad Tajkhorshid
Journal:  J Struct Biol       Date:  2018-08-07       Impact factor: 2.867

3.  A Mutant Chaperonin That Is Functional at Lower Temperatures Enables Hyperthermophilic Archaea To Grow under Cold-Stress Conditions.

Authors:  Le Gao; Tadayuki Imanaka; Shinsuke Fujiwara
Journal:  J Bacteriol       Date:  2015-05-26       Impact factor: 3.490

4.  Advances in the molecular dynamics flexible fitting method for cryo-EM modeling.

Authors:  Ryan McGreevy; Ivan Teo; Abhishek Singharoy; Klaus Schulten
Journal:  Methods       Date:  2016-01-21       Impact factor: 3.608

5.  Gctf: Real-time CTF determination and correction.

Authors:  Kai Zhang
Journal:  J Struct Biol       Date:  2015-11-19       Impact factor: 2.867

6.  Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved.

Authors:  Chrysa Ntountoumi; Panayotis Vlastaridis; Dimitris Mossialos; Constantinos Stathopoulos; Ioannis Iliopoulos; Vasilios Promponas; Stephen G Oliver; Grigoris D Amoutzias
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

  6 in total

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