Literature DB >> 20937907

Structural characterization of a beta-turn mimic within a protein-protein interface.

Björn Eckhardt1, Wolfgang Grosse, Lars-Oliver Essen, Armin Geyer.   

Abstract

β-Turns are secondary structure elements not only exposed on protein surfaces, but also frequently found to be buried in protein-protein interfaces. Protein engineering so far considered mainly the backbone-constraining properties of synthetic β-turn mimics as parts of surface-exposed loops. A β-turn mimic, Hot═Tap, that is available in gram amounts, provides two hydroxyl groups that enhance its turn-inducing properties besides being able to form side-chain-like interactions. NMR studies on cyclic hexapeptides harboring the Hot═Tap dipeptide proved its strong β-turn-inducing capability. Crystallographic analyses of the trimeric fibritin-foldon/Hot═Tap hybrid reveal at atomic resolution how Hot═Tap replaces a βI'-turn by a βII'-type structure. Furthermore, Hot═Tap adapts to the complex protein environment by participating in several direct and water-bridged interactions across the foldon trimer interface. As building blocks, β-turn mimics capable of both backbone and side-chain mimicry may simplify the design of synthetic proteins.

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Year:  2010        PMID: 20937907      PMCID: PMC2972999          DOI: 10.1073/pnas.1004187107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

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4.  The carboxy-terminal domain initiates trimerization of bacteriophage T4 fibritin.

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  14 in total

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Journal:  Org Lett       Date:  2018-06-13       Impact factor: 6.005

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6.  Diversity of Secondary Structure in Catalytic Peptides with β-Turn-Biased Sequences.

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7.  Engineering β-sheets employing N-methylated heterochiral amino acids.

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8.  Structure based antibody-like peptidomimetics.

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