Literature DB >> 11922677

Nucleation and propagation of the collagen triple helix in single-chain and trimerized peptides: transition from third to first order kinetics.

Sergei Boudko1, Sabine Frank, Richard A Kammerer, Jörg Stetefeld, Therese Schulthess, Ruth Landwehr, Ariel Lustig, Hans Peter Bächinger, Jürgen Engel.   

Abstract

The kinetics of triple helix formation from single non-crosslinked peptide chains were studied for the collagen models (ProProGly)10 and (ProHypGly)10 in a broad concentration range and compared with those in nucleated trimers. At very low peptide concentrations the reaction order is 3 but decreases at higher concentrations. For (ProProGly)10 the third order rate constant is 800 M(-2) x s(-1) at 7 degrees C, which corresponds to a very long half time of 15 hours at 60 microM chain concentration. For (ProHypGly)10 the rate constant is about 1000-fold higher, which is consistent with the stabilizing effect of 4-hydroxyproline in collagens. The concentration dependence of the reaction order is explained by a nucleation mechanism in which a very unstable dimer is in fast equilibrium with the monomeric chains and addition of the third chain occurs in a rate-limiting step. At high concentrations nucleation is faster than propagation of helix formation and propagation becomes rate-limiting. To test this hypothesis an artificial nucleus was introduced by fusion of (ProProGly)10 with the trimeric foldon domain of T4 phage or the crosslinking domain of collagen III GlyProProGlyProCysCysGlyGlyGly. These domains were recombinantly attached to the C terminus of (GlyProPro)10 and link the three chains in a similar way to the C-terminal propeptide domain in collagen III. This results in a local intrinsic chain concentration of about 1 M. A first order reaction is observed for the folding of the triple helix in (GlyProPro)10foldon with a half time of 8.3 minutes, which approximately matches the rate of folding from single chains at 1 M peptide concentration. A high activation energy of 54 kJ/mol is found for this reaction, whereas the temperature dependence of the nucleation step is close to zero, confirming earlier findings on natural collagens that cis-trans isomerization of peptide bonds is the rate-limiting step in propagation. Copyright 2002 Elsevier Science Ltd.

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Year:  2002        PMID: 11922677     DOI: 10.1006/jmbi.2002.5439

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  26 in total

1.  Kinetic hysteresis in collagen folding.

Authors:  Kazunori Mizuno; Sergei P Boudko; Jürgen Engel; Hans Peter Bächinger
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

2.  The folding mechanism of collagen-like model peptides explored through detailed molecular simulations.

Authors:  Collin M Stultz
Journal:  Protein Sci       Date:  2006-09       Impact factor: 6.725

3.  The NC16A domain of collagen XVII plays a role in triple helix assembly and stability.

Authors:  Françoise Van den Bergh; Chang-Ling Fu; Monica Olague-Marchan; George J Giudice
Journal:  Biochem Biophys Res Commun       Date:  2006-10-05       Impact factor: 3.575

4.  Analysis of the kinetics of folding of proteins and peptides using circular dichroism.

Authors:  Norma J Greenfield
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

5.  Self-assembly of synthetic collagen triple helices.

Authors:  Frank W Kotch; Ronald T Raines
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-17       Impact factor: 11.205

6.  Preparation and characterization of monomers to tetramers of a collagen-like domain from Streptococcus pyogenes.

Authors:  Yong Y Peng; Violet Stoichevska; Linda Howell; Soren Madsen; Jerome A Werkmeister; Geoff J Dumsday; John A M Ramshaw
Journal:  Bioengineered       Date:  2014-11-11       Impact factor: 3.269

7.  The self-assembly of a mini-fibril with axial periodicity from a designed collagen-mimetic triple helix.

Authors:  Parminder Jeet Kaur; Rebecca Strawn; Hanying Bai; Ke Xu; Gabriel Ordas; Hiroshi Matsui; Yujia Xu
Journal:  J Biol Chem       Date:  2015-02-11       Impact factor: 5.157

8.  High Serum Stability of Collagen Hybridizing Peptides and Their Fluorophore Conjugates.

Authors:  Lucas L Bennink; Daniel J Smith; Catherine A Foss; Martin G Pomper; Yang Li; S Michael Yu
Journal:  Mol Pharm       Date:  2017-05-08       Impact factor: 4.939

9.  Targeting collagen strands by photo-triggered triple-helix hybridization.

Authors:  Yang Li; Catherine A Foss; Daniel D Summerfield; Jefferson J Doyle; Collin M Torok; Harry C Dietz; Martin G Pomper; S Michael Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-27       Impact factor: 11.205

10.  Direct detection of collagenous proteins by fluorescently labeled collagen mimetic peptides.

Authors:  Yang Li; Daniel Ho; Huan Meng; Tania R Chan; Bo An; Hanry Yu; Barbara Brodsky; Albert S Jun; S Michael Yu
Journal:  Bioconjug Chem       Date:  2013-01-03       Impact factor: 4.774

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