Literature DB >> 15544812

Foldon, the natural trimerization domain of T4 fibritin, dissociates into a monomeric A-state form containing a stable beta-hairpin: atomic details of trimer dissociation and local beta-hairpin stability from residual dipolar couplings.

Sebastian Meier1, Sarah Güthe, Thomas Kiefhaber, Stephan Grzesiek.   

Abstract

The C-terminal domain of T4 fibritin (foldon) is obligatory for the formation of the fibritin trimer structure and can be used as an artificial trimerization domain. Its native structure consists of a trimeric beta-hairpin propeller. At low pH, the foldon trimer disintegrates into a monomeric (A-state) form that has similar properties as that of an early intermediate of the trimer folding pathway. The formation of this A-state monomer from the trimer, its structure, thermodynamic stability, equilibrium association and folding dynamics have been characterized to atomic detail by modern high-resolution NMR techniques. The foldon A-state monomer forms a beta-hairpin with intact and stable H-bonds that is similar to the monomer in the foldon trimer, but lacks a defined structure in its N and C-terminal parts. Its thermodynamic stability in pure water is comparable to designed hairpins stabilized in alcohol/water mixtures. Details of the thermal unfolding of the foldon A-state have been characterized by chemical shifts and residual dipolar couplings (RDCs) detected in inert, mechanically stretched polyacrylamide gels. At the onset of the thermal transition, uniform relative changes in RDC values indicate a uniform decrease of local N-HN and Calpha-Halpha order parameters for the hairpin strand residues. In contrast, near-turn residues show particular thermal stability in RDC values and hence in local order parameters. This coincides with increased transition temperatures of the beta-turn residues observed by chemical shifts. At high temperatures, the RDCs converge to non-zero average values consistent with predictions from random chain polymer models. Residue-specific deviations above the unfolding transition reveal the persistence of residual order around proline residues, large hydrophobic residues and at the beta-turn.

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Year:  2004        PMID: 15544812     DOI: 10.1016/j.jmb.2004.09.079

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  46 in total

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Authors:  Pau Bernadó; Laurence Blanchard; Peter Timmins; Dominique Marion; Rob W H Ruigrok; Martin Blackledge
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-11       Impact factor: 11.205

2.  Sequence-specific solvent accessibilities of protein residues in unfolded protein ensembles.

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Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

3.  Theoretical framework for NMR residual dipolar couplings in unfolded proteins.

Authors:  O I Obolensky; Kai Schlepckow; Harald Schwalbe; A V Solov'yov
Journal:  J Biomol NMR       Date:  2007-07-07       Impact factor: 2.835

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Authors:  Mark Wells; Henning Tidow; Trevor J Rutherford; Phineus Markwick; Malene Ringkjobing Jensen; Efstratios Mylonas; Dmitri I Svergun; Martin Blackledge; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

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Journal:  J Biol Chem       Date:  2019-10-22       Impact factor: 5.157

6.  Trivalency of a Nanobody Specific for the Human Respiratory Syncytial Virus Fusion Glycoprotein Drastically Enhances Virus Neutralization and Impacts Escape Mutant Selection.

Authors:  Concepción Palomo; Vicente Mas; Laurent Detalle; Erik Depla; Olga Cano; Mónica Vázquez; Catelijne Stortelers; José A Melero
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7.  Direct in vitro and in vivo evidence for interaction between Hsp47 protein and collagen triple helix.

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Journal:  J Biol Chem       Date:  2012-01-10       Impact factor: 5.157

8.  The Unusual Transmembrane Partition of the Hexameric Channel of the Hepatitis C Virus.

Authors:  Wen Chen; Jyoti Dev; Julija Mezhyrova; Liqiang Pan; Alessandro Piai; James J Chou
Journal:  Structure       Date:  2018-03-15       Impact factor: 5.006

9.  Intranasal vaccination of recombinant H5N1 HA1 proteins fused with foldon and Fc induces strong mucosal immune responses with neutralizing activity: Implication for developing novel mucosal influenza vaccines.

Authors:  Fei Yu; Ye Li; Yan Guo; Lili Wang; Jie Yang; Guangyu Zhao; Yusen Zhou; Lanying Du; Shibo Jiang
Journal:  Hum Vaccin Immunother       Date:  2015       Impact factor: 3.452

10.  Probing the urea dependence of residual structure in denatured human alpha-lactalbumin.

Authors:  Victoria A Higman; Heike I Rösner; Raffaella Ugolini; Lesley H Greene; Christina Redfield; Lorna J Smith
Journal:  J Biomol NMR       Date:  2009-07-19       Impact factor: 2.835

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