Literature DB >> 20934867

Metagenomic era for biocatalyst identification.

Lucía Fernández-Arrojo1, María-Eugenia Guazzaroni, Nieves López-Cortés, Ana Beloqui, Manuel Ferrer.   

Abstract

Microbial enzymes have many known applications as biocatalysts. However, only a few of them are currently employed for biocatalysis even though an annotated collection of more than 190 billion bases is available in metagenome sequence databases from uncultured and highly diverse microbial populations. This review aims at providing conceptual and technical bases for the translation of metagenome data into both experimental and computational frameworks that facilitates a comprehensive analysis of the biocatalysts diversity space. We will also briefly present the status of the current capabilities that assess and predict catalytic potential of environmental sites and track its diversity and evolution in large-scale biocatalysis process resulting from studies applying metagenomics in association with gene fingerprinting, catabolic arrays and complementary '-omics'.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20934867     DOI: 10.1016/j.copbio.2010.09.006

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  41 in total

Review 1.  Biocatalyst development by directed evolution.

Authors:  Meng Wang; Tong Si; Huimin Zhao
Journal:  Bioresour Technol       Date:  2012-01-21       Impact factor: 9.642

2.  Characterization and application of a newly synthesized 2-deoxyribose-5-phosphate aldolase.

Authors:  Zhong-Yu You; Zhi-Qiang Liu; Yu-Guo Zheng; Yin-Chu Shen
Journal:  J Ind Microbiol Biotechnol       Date:  2012-11-22       Impact factor: 3.346

3.  Activity-based metagenomic screening and biochemical characterization of bovine ruminal protozoan glycoside hydrolases.

Authors:  Seth D Findley; Melanie R Mormile; Andrea Sommer-Hurley; Xue-Cheng Zhang; Peter Tipton; Krista Arnett; James H Porter; Monty Kerley; Gary Stacey
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

4.  Characterization of a novel cold-active esterase isolated from swamp sediment metagenome.

Authors:  Sohyeon Seo; Young-Seok Lee; Sang-Hong Yoon; Soo-Jin Kim; Jae Youl Cho; Bum-Soo Hahn; Bon-Sung Koo; Chang-Muk Lee
Journal:  World J Microbiol Biotechnol       Date:  2013-12-19       Impact factor: 3.312

5.  Insights into microbial community structure and diversity in oil palm waste compost.

Authors:  Nurshafika Abd Khalid; Heera Rajandas; Sivachandran Parimannan; Laurence J Croft; Stella Loke; Chun Shiong Chong; Neil C Bruce; Adibah Yahya
Journal:  3 Biotech       Date:  2019-09-20       Impact factor: 2.406

6.  Biochemical diversity of carboxyl esterases and lipases from Lake Arreo (Spain): a metagenomic approach.

Authors:  Mónica Martínez-Martínez; María Alcaide; Anatoli Tchigvintsev; Oleg Reva; Julio Polaina; Rafael Bargiela; María-Eugenia Guazzaroni; Alvaro Chicote; Albert Canet; Francisco Valero; Eugenio Rico Eguizabal; María del Carmen Guerrero; Alexander F Yakunin; Manuel Ferrer
Journal:  Appl Environ Microbiol       Date:  2013-03-29       Impact factor: 4.792

7.  Isolation and characterization of a novel Rhodococcus strain with switchable carbonyl reductase and para-acetylphenol hydroxylase activities.

Authors:  Rui Zhang; Jie Ren; Yu Wang; Qiaqing Wu; Min Wang; Dunming Zhu
Journal:  J Ind Microbiol Biotechnol       Date:  2012-09-27       Impact factor: 3.346

8.  In silico characterization of the global Geobacillus and Parageobacillus secretome.

Authors:  Pedro H Lebre; Habibu Aliyu; Pieter De Maayer; Don A Cowan
Journal:  Microb Cell Fact       Date:  2018-10-03       Impact factor: 5.328

Review 9.  Approaches for characterizing and tracking hospital-associated multidrug-resistant bacteria.

Authors:  Kevin S Blake; JooHee Choi; Gautam Dantas
Journal:  Cell Mol Life Sci       Date:  2021-02-13       Impact factor: 9.261

Review 10.  Potential impacts of soil microbiota manipulation on secondary metabolites production in cannabis.

Authors:  Bulbul Ahmed; Mohamed Hijri
Journal:  J Cannabis Res       Date:  2021-07-03
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