Literature DB >> 23542620

Biochemical diversity of carboxyl esterases and lipases from Lake Arreo (Spain): a metagenomic approach.

Mónica Martínez-Martínez1, María Alcaide, Anatoli Tchigvintsev, Oleg Reva, Julio Polaina, Rafael Bargiela, María-Eugenia Guazzaroni, Alvaro Chicote, Albert Canet, Francisco Valero, Eugenio Rico Eguizabal, María del Carmen Guerrero, Alexander F Yakunin, Manuel Ferrer.   

Abstract

The esterases and lipases from the α/β hydrolase superfamily exhibit an enormous sequence diversity, fold plasticity, and activities. Here, we present the comprehensive sequence and biochemical analyses of seven distinct esterases and lipases from the metagenome of Lake Arreo, an evaporite karstic lake in Spain (42°46'N, 2°59'W; altitude, 655 m). Together with oligonucleotide usage patterns and BLASTP analysis, our study of esterases/lipases mined from Lake Arreo suggests that its sediment contains moderately halophilic and cold-adapted proteobacteria containing DNA fragments of distantly related plasmids or chromosomal genomic islands of plasmid and phage origins. This metagenome encodes esterases/lipases with broad substrate profiles (tested over a set of 101 structurally diverse esters) and habitat-specific characteristics, as they exhibit maximal activity at alkaline pH (8.0 to 8.5) and temperature of 16 to 40°C, and they are stimulated (1.5 to 2.2 times) by chloride ions (0.1 to 1.2 M), reflecting an adaptation to environmental conditions. Our work provides further insights into the potential significance of the Lake Arreo esterases/lipases for biotechnology processes (i.e., production of enantiomers and sugar esters), because these enzymes are salt tolerant and are active at low temperatures and against a broad range of substrates. As an example, the ability of a single protein to hydrolyze triacylglycerols, (non)halogenated alkyl and aryl esters, cinnamoyl and carbohydrate esters, lactones, and chiral epoxides to a similar extent was demonstrated.

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Year:  2013        PMID: 23542620      PMCID: PMC3675924          DOI: 10.1128/AEM.00240-13

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  50 in total

1.  Preparation and crystal structure of the recombinant alpha(1)/alpha(2) catalytic heterodimer of bovine brain platelet-activating factor acetylhydrolase Ib.

Authors:  P J Sheffield; T W McMullen; J Li; Y S Ho; S M Garrard; U Derewenda; Z S Derewenda
Journal:  Protein Eng       Date:  2001-07

2.  The functional implications of the dimerization of the catalytic subunits of the mammalian brain platelet-activating factor acetylhydrolase (Ib).

Authors:  T W McMullen; J Li; P J Sheffield; J Aoki; T W Martin; H Arai; K Inoue; Z S Derewenda
Journal:  Protein Eng       Date:  2000-12

Review 3.  GDSL family of serine esterases/lipases.

Authors:  Casimir C Akoh; Guan-Chiun Lee; Yen-Chywan Liaw; Tai-Huang Huang; Jei-Fu Shaw
Journal:  Prog Lipid Res       Date:  2004-11       Impact factor: 16.195

4.  The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

Authors:  Shibu Yooseph; Granger Sutton; Douglas B Rusch; Aaron L Halpern; Shannon J Williamson; Karin Remington; Jonathan A Eisen; Karla B Heidelberg; Gerard Manning; Weizhong Li; Lukasz Jaroszewski; Piotr Cieplak; Christopher S Miller; Huiying Li; Susan T Mashiyama; Marcin P Joachimiak; Christopher van Belle; John-Marc Chandonia; David A Soergel; Yufeng Zhai; Kannan Natarajan; Shaun Lee; Benjamin J Raphael; Vineet Bafna; Robert Friedman; Steven E Brenner; Adam Godzik; David Eisenberg; Jack E Dixon; Susan S Taylor; Robert L Strausberg; Marvin Frazier; J Craig Venter
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029

5.  Isolation and biochemical characterization of two novel metagenome-derived esterases.

Authors:  C Elend; C Schmeisser; C Leggewie; P Babiak; J D Carballeira; H L Steele; J-L Reymond; K-E Jaeger; W R Streit
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

6.  Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships.

Authors:  Ana Beloqui; Marcos Pita; Julio Polaina; Arturo Martínez-Arias; Olga V Golyshina; Miren Zumárraga; Michail M Yakimov; Humberto García-Arellano; Miguel Alcalde; Víctor M Fernández; Kieran Elborough; José M Andreu; Antonio Ballesteros; Francisco J Plou; Kenneth N Timmis; Manuel Ferrer; Peter N Golyshin
Journal:  J Biol Chem       Date:  2006-06-01       Impact factor: 5.157

Review 7.  Lipase applications in oil hydrolysis with a case study on castor oil: a review.

Authors:  Debajyoti Goswami; Jayanta Kumar Basu; Sirshendu De
Journal:  Crit Rev Biotechnol       Date:  2012-06-08       Impact factor: 8.429

8.  Extremely stable and versatile carboxylesterase from a hyperthermophilic archaeon.

Authors:  Yuji Hotta; Satoshi Ezaki; Haruyuki Atomi; Tadayuki Imanaka
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

9.  Identification of two novel esterases from a marine metagenomic library derived from South China Sea.

Authors:  Xinmin Chu; Haoze He; Changquan Guo; Baolin Sun
Journal:  Appl Microbiol Biotechnol       Date:  2008-07-04       Impact factor: 4.813

10.  Crystal structure of hyperthermophilic esterase EstE1 and the relationship between its dimerization and thermostability properties.

Authors:  Jung-Sue Byun; Jin-Kyu Rhee; Nam Doo Kim; Jeonghyeok Yoon; Dong-Uk Kim; Eunhee Koh; Jong-Won Oh; Hyun-Soo Cho
Journal:  BMC Struct Biol       Date:  2007-07-12
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  15 in total

1.  Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics.

Authors:  María Alcaide; Anatoli Tchigvintsev; Mónica Martínez-Martínez; Ana Popovic; Oleg N Reva; Álvaro Lafraya; Rafael Bargiela; Taras Y Nechitaylo; Ruth Matesanz; Marie-Anne Cambon-Bonavita; Mohamed Jebbar; Michail M Yakimov; Alexei Savchenko; Olga V Golyshina; Alexander F Yakunin; Peter N Golyshin; Manuel Ferrer
Journal:  Appl Environ Microbiol       Date:  2015-01-16       Impact factor: 4.792

Review 2.  Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening.

Authors:  María-Eugenia Guazzaroni; Rafael Silva-Rocha; Richard John Ward
Journal:  Microb Biotechnol       Date:  2014-08-13       Impact factor: 5.813

3.  Biochemical studies on a versatile esterase that is most catalytically active with polyaromatic esters.

Authors:  Mónica Martínez-Martínez; Iván Lores; Carlina Peña-García; Rafael Bargiela; Dolores Reyes-Duarte; María-Eugenia Guazzaroni; Ana Isabel Peláez; Jesús Sánchez; Manuel Ferrer
Journal:  Microb Biotechnol       Date:  2014-01-13       Impact factor: 5.813

Review 4.  Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends.

Authors:  Manuel Ferrer; Mónica Martínez-Martínez; Rafael Bargiela; Wolfgang R Streit; Olga V Golyshina; Peter N Golyshin
Journal:  Microb Biotechnol       Date:  2015-08-14       Impact factor: 5.813

5.  Characterization of a cold-active and salt tolerant esterase identified by functional screening of Arctic metagenomic libraries.

Authors:  Concetta De Santi; Bjørn Altermark; Marcin Miroslaw Pierechod; Luca Ambrosino; Donatella de Pascale; Nils-Peder Willassen
Journal:  BMC Biochem       Date:  2016-01-19       Impact factor: 4.059

6.  Metagenomics of an Alkaline Hot Spring in Galicia (Spain): Microbial Diversity Analysis and Screening for Novel Lipolytic Enzymes.

Authors:  Olalla López-López; Kamila Knapik; Maria-Esperanza Cerdán; María-Isabel González-Siso
Journal:  Front Microbiol       Date:  2015-11-20       Impact factor: 5.640

7.  Aii810, a Novel Cold-Adapted N-Acylhomoserine Lactonase Discovered in a Metagenome, Can Strongly Attenuate Pseudomonas aeruginosa Virulence Factors and Biofilm Formation.

Authors:  Xinjiong Fan; Mingjun Liang; Lei Wang; Ruo Chen; He Li; Xiaolong Liu
Journal:  Front Microbiol       Date:  2017-10-10       Impact factor: 5.640

8.  Pre_GI: a global map of ontological links between horizontally transferred genomic islands in bacterial and archaeal genomes.

Authors:  Rian Pierneef; Louis Cronje; Oliver Bezuidt; Oleg N Reva
Journal:  Database (Oxford)       Date:  2015-06-17       Impact factor: 3.451

9.  The production and characterization of a new active lipase from Acremonium alcalophilum using a plant bioreactor.

Authors:  Eridan Orlando Pereira; Adrian Tsang; Tim A McAllister; Rima Menassa
Journal:  Biotechnol Biofuels       Date:  2013-08-01       Impact factor: 6.040

10.  A combined bioinformatics and functional metagenomics approach to discovering lipolytic biocatalysts.

Authors:  Thorsten Masuch; Anna Kusnezowa; Sebastian Nilewski; José T Bautista; Robert Kourist; Lars I Leichert
Journal:  Front Microbiol       Date:  2015-10-13       Impact factor: 5.640

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