Literature DB >> 20934772

The piRNA pathway: a fly's perspective on the guardian of the genome.

Kirsten-André Senti1, Julius Brennecke.   

Abstract

Throughout the eukaryotic lineage, small RNA silencing pathways protect the genome against the deleterious influence of selfish genetic elements such as transposons. In animals an elaborate small RNA pathway centered on PIWI proteins and their interacting piRNAs silences transposons within the germline. In contrast to other small RNA silencing pathways, we lack a mechanistic understanding of this genome defense system. However, genetic and molecular studies have uncovered a fascinating conceptual framework for this pathway that is conserved from sponges to mammals. We discuss our current understanding of the piRNA pathway in Drosophila with an emphasis on origin and biogenesis of piRNAs.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20934772      PMCID: PMC4988489          DOI: 10.1016/j.tig.2010.08.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  110 in total

Review 1.  Perspective: machines for RNAi.

Authors:  Yukihide Tomari; Phillip D Zamore
Journal:  Genes Dev       Date:  2005-03-01       Impact factor: 11.361

2.  SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells.

Authors:  Peter W Reddien; Néstor J Oviedo; Joya R Jennings; James C Jenkin; Alejandro Sánchez Alvarado
Journal:  Science       Date:  2005-11-25       Impact factor: 47.728

3.  MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline.

Authors:  Michelle A Carmell; Angélique Girard; Henk J G van de Kant; Deborah Bourc'his; Timothy H Bestor; Dirk G de Rooij; Gregory J Hannon
Journal:  Dev Cell       Date:  2007-03-29       Impact factor: 12.270

4.  An epigenetic role for maternally inherited piRNAs in transposon silencing.

Authors:  Julius Brennecke; Colin D Malone; Alexei A Aravin; Ravi Sachidanandam; Alexander Stark; Gregory J Hannon
Journal:  Science       Date:  2008-11-28       Impact factor: 47.728

5.  Cutoff and aubergine mutations result in retrotransposon upregulation and checkpoint activation in Drosophila.

Authors:  Yu Chen; Attilio Pane; Trudi Schüpbach
Journal:  Curr Biol       Date:  2007-03-15       Impact factor: 10.834

6.  Developmentally regulated piRNA clusters implicate MILI in transposon control.

Authors:  Alexei A Aravin; Ravi Sachidanandam; Angelique Girard; Katalin Fejes-Toth; Gregory J Hannon
Journal:  Science       Date:  2007-04-19       Impact factor: 47.728

Review 7.  Endogenous small interfering RNAs in animals.

Authors:  Katsutomo Okamura; Eric C Lai
Journal:  Nat Rev Mol Cell Biol       Date:  2008-09       Impact factor: 94.444

8.  Unique germ-line organelle, nuage, functions to repress selfish genetic elements in Drosophila melanogaster.

Authors:  Ai Khim Lim; Toshie Kai
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-11       Impact factor: 11.205

9.  Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line.

Authors:  Nelson C Lau; Nicolas Robine; Raquel Martin; Wei-Jen Chung; Yuzo Niki; Eugene Berezikov; Eric C Lai
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

10.  Dicer-independent primal RNAs trigger RNAi and heterochromatin formation.

Authors:  Mario Halic; Danesh Moazed
Journal:  Cell       Date:  2010-02-19       Impact factor: 41.582

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  117 in total

Review 1.  The regulatory activities of plant microRNAs: a more dynamic perspective.

Authors:  Yijun Meng; Chaogang Shao; Huizhong Wang; Ming Chen
Journal:  Plant Physiol       Date:  2011-10-14       Impact factor: 8.340

2.  shutdown is a component of the Drosophila piRNA biogenesis machinery.

Authors:  Jonathan B Preall; Benjamin Czech; Paloma M Guzzardo; Felix Muerdter; Gregory J Hannon
Journal:  RNA       Date:  2012-07-02       Impact factor: 4.942

Review 3.  Genome Biology and the Evolution of Cell-Size Diversity.

Authors:  Rachel Lockridge Mueller
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-08-07       Impact factor: 10.005

4.  Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis.

Authors:  Jon Reinders; Marie Mirouze; Joël Nicolet; Jerzy Paszkowski
Journal:  EMBO Rep       Date:  2013-07-09       Impact factor: 8.807

Review 5.  Position-effect variegation, heterochromatin formation, and gene silencing in Drosophila.

Authors:  Sarah C R Elgin; Gunter Reuter
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-08-01       Impact factor: 10.005

6.  Cis- and Trans-regulatory Effects on Gene Expression in a Natural Population of Drosophila melanogaster.

Authors:  Naoki Osada; Ryutaro Miyagi; Aya Takahashi
Journal:  Genetics       Date:  2017-06-14       Impact factor: 4.562

7.  Reverse transcriptase and intron number evolution.

Authors:  Kemin Zhou; Alan Kuo; Igor V Grigoriev
Journal:  Stem Cell Investig       Date:  2014-09-28

8.  Identification and Functional Analysis of the Pre-piRNA 3' Trimmer in Silkworms.

Authors:  Natsuko Izumi; Keisuke Shoji; Yuriko Sakaguchi; Shozo Honda; Yohei Kirino; Tsutomu Suzuki; Susumu Katsuma; Yukihide Tomari
Journal:  Cell       Date:  2016-02-25       Impact factor: 41.582

Review 9.  Recognizing the enemy within: licensing RNA-guided genome defense.

Authors:  Phillip A Dumesic; Hiten D Madhani
Journal:  Trends Biochem Sci       Date:  2013-11-23       Impact factor: 13.807

10.  Structure and function of Zucchini endoribonuclease in piRNA biogenesis.

Authors:  Hiroshi Nishimasu; Hirotsugu Ishizu; Kuniaki Saito; Satoshi Fukuhara; Miharu K Kamatani; Luc Bonnefond; Naoki Matsumoto; Tomohiro Nishizawa; Keita Nakanaga; Junken Aoki; Ryuichiro Ishitani; Haruhiko Siomi; Mikiko C Siomi; Osamu Nureki
Journal:  Nature       Date:  2012-10-14       Impact factor: 49.962

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