Literature DB >> 18719707

Endogenous small interfering RNAs in animals.

Katsutomo Okamura1, Eric C Lai.   

Abstract

Until recently, only nematodes among animals had a well-defined endogenous small interfering RNA (endo-siRNA) pathway. This has changed dramatically with the recent discovery of diverse intramolecular and intermolecular substrates that generate endo-siRNAs in Drosophila melanogaster and mice. These findings suggest broad and possibly conserved roles for endogenous RNA interference in regulating host-gene expression and transposable element transcripts. They also raise many questions regarding the biogenesis and function of small regulatory RNAs in animals.

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Year:  2008        PMID: 18719707      PMCID: PMC2729316          DOI: 10.1038/nrm2479

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  71 in total

1.  Argonaute2 is the catalytic engine of mammalian RNAi.

Authors:  Jidong Liu; Michelle A Carmell; Fabiola V Rivas; Carolyn G Marsden; J Michael Thomson; Ji-Joon Song; Scott M Hammond; Leemor Joshua-Tor; Gregory J Hannon
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

2.  Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes.

Authors:  Oliver H Tam; Alexei A Aravin; Paula Stein; Angelique Girard; Elizabeth P Murchison; Sihem Cheloufi; Emily Hodges; Martin Anger; Ravi Sachidanandam; Richard M Schultz; Gregory J Hannon
Journal:  Nature       Date:  2008-04-10       Impact factor: 49.962

3.  Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes.

Authors:  Toshiaki Watanabe; Yasushi Totoki; Atsushi Toyoda; Masahiro Kaneda; Satomi Kuramochi-Miyagawa; Yayoi Obata; Hatsune Chiba; Yuji Kohara; Tomohiro Kono; Toru Nakano; M Azim Surani; Yoshiyuki Sakaki; Hiroyuki Sasaki
Journal:  Nature       Date:  2008-04-10       Impact factor: 49.962

4.  Endogenous RNA interference provides a somatic defense against Drosophila transposons.

Authors:  Wei-Jen Chung; Katsutomo Okamura; Raquel Martin; Eric C Lai
Journal:  Curr Biol       Date:  2008-05-22       Impact factor: 10.834

5.  Drosophila R2D2 mediates follicle formation in somatic tissues through interactions with Dicer-1.

Authors:  Savitha Kalidas; Charcacia Sanders; Xuecheng Ye; Tamara Strauss; Mary Kuhn; Qinghua Liu; Dean P Smith
Journal:  Mech Dev       Date:  2008-01-24       Impact factor: 1.882

6.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.

Authors:  Gunter Meister; Markus Landthaler; Agnieszka Patkaniowska; Yair Dorsett; Grace Teng; Thomas Tuschl
Journal:  Mol Cell       Date:  2004-07-23       Impact factor: 17.970

7.  Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways.

Authors:  Katsutomo Okamura; Akira Ishizuka; Haruhiko Siomi; Mikiko C Siomi
Journal:  Genes Dev       Date:  2004-07-01       Impact factor: 11.361

8.  Two molecular features contribute to the Argonaute specificity for the microRNA and RNAi pathways in C. elegans.

Authors:  Guillaume Jannot; Marie-Eve L Boisvert; Isabelle H Banville; Martin J Simard
Journal:  RNA       Date:  2008-03-26       Impact factor: 4.942

9.  Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster.

Authors:  Katsutomo Okamura; Sudha Balla; Raquel Martin; Na Liu; Eric C Lai
Journal:  Nat Struct Mol Biol       Date:  2008-05-25       Impact factor: 15.369

10.  Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells.

Authors:  Megha Ghildiyal; Hervé Seitz; Michael D Horwich; Chengjian Li; Tingting Du; Soohyun Lee; Jia Xu; Ellen L W Kittler; Maria L Zapp; Zhiping Weng; Phillip D Zamore
Journal:  Science       Date:  2008-04-10       Impact factor: 47.728

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  165 in total

1.  Conservation of the relative tRNA composition in healthy and cancerous tissues.

Authors:  Shelly Mahlab; Tamir Tuller; Michal Linial
Journal:  RNA       Date:  2012-02-22       Impact factor: 4.942

Review 2.  Promoter-associated RNAs and promoter-targeted RNAs.

Authors:  Bing-Xue Yan; Jin-Xia Ma
Journal:  Cell Mol Life Sci       Date:  2012-03-14       Impact factor: 9.261

3.  An endogenous, systemic RNAi pathway in plants.

Authors:  Patrice Dunoyer; Christopher A Brosnan; Gregory Schott; Yu Wang; Florence Jay; Abdelmalek Alioua; Christophe Himber; Olivier Voinnet
Journal:  EMBO J       Date:  2010-04-22       Impact factor: 11.598

4.  Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome.

Authors:  Tim R Mercer; Marcel E Dinger; Cameron P Bracken; Gabriel Kolle; Jan M Szubert; Darren J Korbie; Marjan E Askarian-Amiri; Brooke B Gardiner; Gregory J Goodall; Sean M Grimmond; John S Mattick
Journal:  Genome Res       Date:  2010-11-02       Impact factor: 9.043

Review 5.  Many ways to generate microRNA-like small RNAs: non-canonical pathways for microRNA production.

Authors:  Keita Miyoshi; Tomohiro Miyoshi; Haruhiko Siomi
Journal:  Mol Genet Genomics       Date:  2010-07-02       Impact factor: 3.291

Review 6.  miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.

Authors:  T Desvignes; P Batzel; E Berezikov; K Eilbeck; J T Eppig; M S McAndrews; A Singer; J H Postlethwait
Journal:  Trends Genet       Date:  2015-10-08       Impact factor: 11.639

Review 7.  MicroRNAs in normal and psoriatic skin.

Authors:  Jing Xia; Weixiong Zhang
Journal:  Physiol Genomics       Date:  2013-12-10       Impact factor: 3.107

8.  RNAi pathways contribute to developmental history-dependent phenotypic plasticity in C. elegans.

Authors:  Sarah E Hall; Gung-Wei Chirn; Nelson C Lau; Piali Sengupta
Journal:  RNA       Date:  2013-01-17       Impact factor: 4.942

Review 9.  Short non-coding RNA biology and neurodegenerative disorders: novel disease targets and therapeutics.

Authors:  Marc S Weinberg; Matthew J A Wood
Journal:  Hum Mol Genet       Date:  2009-04-15       Impact factor: 6.150

10.  C. elegans RNA-dependent RNA polymerases rrf-1 and ego-1 silence Drosophila transgenes by differing mechanisms.

Authors:  Guowen Duan; Robert B Saint; Chris A Helliwell; Carolyn A Behm; Ming-Bo Wang; Peter M Waterhouse; Karl H J Gordon
Journal:  Cell Mol Life Sci       Date:  2012-12-08       Impact factor: 9.261

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