Literature DB >> 20932833

Consolidation of glycosyl hydrolase family 30: a dual domain 4/7 hydrolase family consisting of two structurally distinct groups.

Franz J St John1, Javier M González, Edwin Pozharski.   

Abstract

In this work glycosyl hydrolase (GH) family 30 (GH30) is analyzed and shown to consist of its currently classified member sequences as well as several homologous sequence groups currently assigned within family GH5. A large scale amino acid sequence alignment and a phylogenetic tree were generated and GH30 groups and subgroups were designated. A partial rearrangement in the GH30 defining side-associated β-domain contributes to the differentiation of two major groups that contain up to eight subgroups. For this CAZy family of Clan A enzymes the dual domain fold is conserved, suggesting that it may be a requirement for evolved function. This work redefines GH family 30 and serves as a guide for future efforts regarding enzymes classified within this family. Published by Elsevier B.V.

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Year:  2010        PMID: 20932833     DOI: 10.1016/j.febslet.2010.09.051

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  51 in total

1.  Overexpression, crystallization and preliminary X-ray crystallographic analysis of glucuronoxylan xylanohydrolase (Xyn30A) from Clostridium thermocellum.

Authors:  Anil Kumar Verma; Arun Goyal; Filipe Freire; Pedro Bule; Immacolata Venditto; Joana L A Brás; Helena Santos; Vânia Cardoso; Cecília Bonifácio; Andrew Thompson; Maria João Romão; José A M Prates; Luís M A Ferreira; Carlos M G A Fontes; Shabir Najmudin
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-11-30

2.  GH30 Glucuronoxylan-Specific Xylanase from Streptomyces turgidiscabies C56.

Authors:  Tomoko Maehara; Haruka Yagi; Tomoko Sato; Mayumi Ohnishi-Kameyama; Zui Fujimoto; Kei Kamino; Yoshiaki Kitamura; Franz St John; Katsuro Yaoi; Satoshi Kaneko
Journal:  Appl Environ Microbiol       Date:  2018-01-31       Impact factor: 4.792

3.  Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.

Authors:  Gregory Arnal; Peter J Stogios; Jathavan Asohan; Mohamed A Attia; Tatiana Skarina; Alexander Holm Viborg; Bernard Henrissat; Alexei Savchenko; Harry Brumer
Journal:  J Biol Chem       Date:  2019-07-19       Impact factor: 5.157

4.  Modular glucuronoxylan-specific xylanase with a family CBM35 carbohydrate-binding module.

Authors:  Susana Valeria Valenzuela; Pilar Diaz; F I Javier Pastor
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

5.  Biochemical and kinetic characterization of GH43 β-D-xylosidase/α-L-arabinofuranosidase and GH30 α-L-arabinofuranosidase/β-D -xylosidase from rumen metagenome.

Authors:  Jungang Zhou; Lei Bao; Lei Chang; Yufei Zhou; Hong Lu
Journal:  J Ind Microbiol Biotechnol       Date:  2011-07-02       Impact factor: 3.346

Review 6.  α-Amylase: an enzyme specificity found in various families of glycoside hydrolases.

Authors:  Štefan Janeček; Birte Svensson; E Ann MacGregor
Journal:  Cell Mol Life Sci       Date:  2013-06-27       Impact factor: 9.261

7.  A Need for Improved Cellulase Identification from Metagenomic Sequence Data.

Authors:  Rebecca Co; Laura A Hug
Journal:  Appl Environ Microbiol       Date:  2020-12-17       Impact factor: 4.792

8.  Structural analysis of glucuronoxylan-specific Xyn30D and its attached CBM35 domain gives insights into the role of modularity in specificity.

Authors:  M Angela Sainz-Polo; Susana Valeria Valenzuela; Beatriz González; F I Javier Pastor; Julia Sanz-Aparicio
Journal:  J Biol Chem       Date:  2014-09-08       Impact factor: 5.157

9.  Distinguishing the differences in β-glycosylceramidase folds, dynamics, and actions informs therapeutic uses.

Authors:  Fredj Ben Bdira; Marta Artola; Herman S Overkleeft; Marcellus Ubbink; Johannes M F G Aerts
Journal:  J Lipid Res       Date:  2018-10-02       Impact factor: 5.922

10.  Crystal structure of GH30-7 endoxylanase C from the filamentous fungus Talaromyces cellulolyticus.

Authors:  Yusuke Nakamichi; Tatsuya Fujii; Masahiro Watanabe; Akinori Matsushika; Hiroyuki Inoue
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-07-28       Impact factor: 1.056

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