Literature DB >> 33067195

A Need for Improved Cellulase Identification from Metagenomic Sequence Data.

Rebecca Co1, Laura A Hug2.   

Abstract

Improved sequencing technologies and the maturation of metagenomic approaches allow the identification of gene variants with potential industrial applications, including cellulases. Cellulase identification from metagenomic environmental surveys is complicated by inconsistent nomenclature and multiple categorization systems. Here, we summarize the current classification and nomenclature systems, with recommendations for improvements to these systems. Addressing the issues described will strengthen the annotation of cellulose-active enzymes from environmental sequence data sets-a rapidly growing resource in environmental and applied microbiology.
Copyright © 2020 American Society for Microbiology.

Entities:  

Keywords:  CAZy; Pfam; annotation; cellulase; cellulose; classification; high-throughput sequencing; metagenomics; microbial ecology

Mesh:

Substances:

Year:  2020        PMID: 33067195      PMCID: PMC7755236          DOI: 10.1128/AEM.01928-20

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  32 in total

1.  Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family.

Authors:  Paul V Harris; Ditte Welner; K C McFarland; Edward Re; Jens-Christian Navarro Poulsen; Kimberly Brown; Rune Salbo; Hanshu Ding; Elena Vlasenko; Sandy Merino; Feng Xu; Joel Cherry; Sine Larsen; Leila Lo Leggio
Journal:  Biochemistry       Date:  2010-04-20       Impact factor: 3.162

2.  Consolidation of glycosyl hydrolase family 30: a dual domain 4/7 hydrolase family consisting of two structurally distinct groups.

Authors:  Franz J St John; Javier M González; Edwin Pozharski
Journal:  FEBS Lett       Date:  2010-10-08       Impact factor: 4.124

Review 3.  Bacterial biodegradation and bioconversion of industrial lignocellulosic streams.

Authors:  Stephanie L Mathews; Joel Pawlak; Amy M Grunden
Journal:  Appl Microbiol Biotechnol       Date:  2015-02-27       Impact factor: 4.813

Review 4.  Processivity and the Mechanisms of Processive Endoglucanases.

Authors:  Shanshan Wu; Shufang Wu
Journal:  Appl Biochem Biotechnol       Date:  2019-08-05       Impact factor: 2.926

Review 5.  Structures and mechanisms of glycosyl hydrolases.

Authors:  G Davies; B Henrissat
Journal:  Structure       Date:  1995-09-15       Impact factor: 5.006

6.  Cellulases: ambiguous nonhomologous enzymes in a genomic perspective.

Authors:  Leonid O Sukharnikov; Brian J Cantwell; Mircea Podar; Igor B Zhulin
Journal:  Trends Biotechnol       Date:  2011-06-16       Impact factor: 19.536

7.  Processive endoglucanases mediate degradation of cellulose by Saccharophagus degradans.

Authors:  Brian J Watson; Haitao Zhang; Atkinson G Longmire; Young Hwan Moon; Steven W Hutcheson
Journal:  J Bacteriol       Date:  2009-07-17       Impact factor: 3.490

8.  HMMER web server: interactive sequence similarity searching.

Authors:  Robert D Finn; Jody Clements; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2011-05-18       Impact factor: 16.971

9.  Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities.

Authors:  R E Danczak; M D Johnston; C Kenah; M Slattery; K C Wrighton; M J Wilkins
Journal:  Microbiome       Date:  2017-09-02       Impact factor: 14.650

Review 10.  Lignocellulose degradation mechanisms across the Tree of Life.

Authors:  Simon M Cragg; Gregg T Beckham; Neil C Bruce; Timothy D H Bugg; Daniel L Distel; Paul Dupree; Amaia Green Etxabe; Barry S Goodell; Jody Jellison; John E McGeehan; Simon J McQueen-Mason; Kirk Schnorr; Paul H Walton; Joy E M Watts; Martin Zimmer
Journal:  Curr Opin Chem Biol       Date:  2015-11-14       Impact factor: 8.822

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  1 in total

Review 1.  From Cancer Therapy to Winemaking: The Molecular Structure and Applications of β-Glucans and β-1, 3-Glucanases.

Authors:  Catarina Caseiro; Joana Nunes Ribeiro Dias; Carlos Mendes Godinho de Andrade Fontes; Pedro Bule
Journal:  Int J Mol Sci       Date:  2022-03-15       Impact factor: 5.923

  1 in total

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