Literature DB >> 30279220

Distinguishing the differences in β-glycosylceramidase folds, dynamics, and actions informs therapeutic uses.

Fredj Ben Bdira1, Marta Artola2, Herman S Overkleeft2, Marcellus Ubbink1, Johannes M F G Aerts3.   

Abstract

Glycosyl hydrolases (GHs) are carbohydrate-active enzymes that hydrolyze a specific β-glycosidic bond in glycoconjugate substrates; β-glucosidases degrade glucosylceramide, a ubiquitous glycosphingolipid. GHs are grouped into structurally similar families that themselves can be grouped into clans. GH1, GH5, and GH30 glycosidases belong to clan A hydrolases with a catalytic (β/α)8 TIM barrel domain, whereas GH116 belongs to clan O with a catalytic (α/α)6 domain. In humans, GH abnormalities underlie metabolic diseases. The lysosomal enzyme glucocerebrosidase (family GH30), deficient in Gaucher disease and implicated in Parkinson disease etiology, and the cytosol-facing membrane-bound glucosylceramidase (family GH116) remove the terminal glucose from the ceramide lipid moiety. Here, we compare enzyme differences in fold, action, dynamics, and catalytic domain stabilization by binding site occupancy. We also explore other glycosidases with reported glycosylceramidase activity, including human cytosolic β-glucosidase, intestinal lactase-phlorizin hydrolase, and lysosomal galactosylceramidase. Last, we describe the successful translation of research to practice: recombinant glycosidases and glucosylceramide metabolism modulators are approved drug products (enzyme replacement therapies). Activity-based probes now facilitate the diagnosis of enzyme deficiency and screening for compounds that interact with the catalytic pocket of glycosidases. Future research may deepen the understanding of the functional variety of these enzymes and their therapeutic potential.
Copyright © 2018 Ben Bdira et al.

Entities:  

Keywords:  Gaucher disease; Parkinson disease; cerebrosides; cholesterol; crystal; enzymology; glycolipids

Mesh:

Substances:

Year:  2018        PMID: 30279220      PMCID: PMC6277158          DOI: 10.1194/jlr.R086629

Source DB:  PubMed          Journal:  J Lipid Res        ISSN: 0022-2275            Impact factor:   5.922


  165 in total

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Review 2.  Polyhydroxylated alkaloids -- natural occurrence and therapeutic applications.

Authors:  A A Watson; G W Fleet; N Asano; R J Molyneux; R J Nash
Journal:  Phytochemistry       Date:  2001-02       Impact factor: 4.072

3.  Elevation of glucosylceramide in multidrug-resistant cancer cells and accumulation in cytoplasmic droplets.

Authors:  H Morjani; N Aouali; R Belhoussine; R J Veldman; T Levade; M Manfait
Journal:  Int J Cancer       Date:  2001-10-15       Impact factor: 7.396

Review 4.  Mechanism-based inhibitors of glycosidases: design and applications.

Authors:  Wouter W Kallemeijn; Martin D Witte; Tom Wennekes; Johannes M F G Aerts
Journal:  Adv Carbohydr Chem Biochem       Date:  2014       Impact factor: 12.200

5.  Identification and development of biphenyl substituted iminosugars as improved dual glucosylceramide synthase/neutral glucosylceramidase inhibitors.

Authors:  Amar T Ghisaidoobe; Richard J B H N van den Berg; Saleem S Butt; Anneke Strijland; Wilma E Donker-Koopman; Saskia Scheij; Adrianus M C H van den Nieuwendijk; Gerrit-Jan Koomen; Arnold van Loevezijn; Mark Leemhuis; Tom Wennekes; Mario van der Stelt; Gijsbert A van der Marel; Constant A A van Boeckel; Johannes M F G Aerts; Herman S Overkleeft
Journal:  J Med Chem       Date:  2014-10-17       Impact factor: 7.446

6.  Degradation of glycosphingolipids in oyster: ceramide glycanase and ceramidase in the hepatopancreas of oyster, Crassostrea virginica.

Authors:  Nadejda V Pavlova; Su-Chen Li; Yu-Teh Li
Journal:  Glycoconj J       Date:  2017-10-16       Impact factor: 2.916

7.  Sustained therapeutic effects of oral miglustat (Zavesca, N-butyldeoxynojirimycin, OGT 918) in type I Gaucher disease.

Authors:  D Elstein; C Hollak; J M F G Aerts; S van Weely; M Maas; T M Cox; R H Lachmann; M Hrebicek; F M Platt; T D Butters; R A Dwek; A Zimran
Journal:  J Inherit Metab Dis       Date:  2004       Impact factor: 4.982

8.  Purification and characterization of galactocerebrosidase from human lymphocytes.

Authors:  N Sakai; K Inui; M Midorikawa; Y Okuno; S Ueda; A Iwamatsu; S Okada
Journal:  J Biochem       Date:  1994-09       Impact factor: 3.387

9.  Isolation and characterization of ceramide glycanase from the leech, Macrobdella decora.

Authors:  B Zhou; S C Li; R A Laine; R T Huang; Y T Li
Journal:  J Biol Chem       Date:  1989-07-25       Impact factor: 5.157

10.  Accumulation of glucosylceramide in the absence of the beta-glucosidase GBA2 alters cytoskeletal dynamics.

Authors:  Diana Raju; Sophie Schonauer; Hussein Hamzeh; Kevin C Flynn; Frank Bradke; Katharina Vom Dorp; Peter Dörmann; Yildiz Yildiz; Christian Trötschel; Ansgar Poetsch; Bernadette Breiden; Konrad Sandhoff; Heinz G Körschen; Dagmar Wachten
Journal:  PLoS Genet       Date:  2015-03-24       Impact factor: 5.917

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  3 in total

Review 1.  Plant Glycosides and Glycosidases: A Treasure-Trove for Therapeutics.

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Journal:  Front Plant Sci       Date:  2020-04-07       Impact factor: 5.753

Review 2.  Glucocerebrosidase: Functions in and Beyond the Lysosome.

Authors:  Daphne E C Boer; Jeroen van Smeden; Joke A Bouwstra; Johannes M F G Aerts
Journal:  J Clin Med       Date:  2020-03-09       Impact factor: 4.241

3.  Dynamics of Ligand Binding to a Rigid Glycosidase*.

Authors:  Fredj Ben Bdira; Christopher A Waudby; Alexander N Volkov; Sybrin P Schröder; Eiso Ab; Jeroen D C Codée; Hermen S Overkleeft; Johannes M F G Aerts; Hugo van Ingen; Marcellus Ubbink
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-03       Impact factor: 15.336

  3 in total

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