Literature DB >> 32744245

Crystal structure of GH30-7 endoxylanase C from the filamentous fungus Talaromyces cellulolyticus.

Yusuke Nakamichi1, Tatsuya Fujii1, Masahiro Watanabe1, Akinori Matsushika1, Hiroyuki Inoue1.   

Abstract

GH30-7 endoxylanase C from the cellulolytic fungus Talaromyces cellulolyticus (TcXyn30C) belongs to glycoside hydrolase family 30 subfamily 7, and specifically releases 22-(4-O-methyl-α-D-glucuronosyl)-xylobiose from glucuronoxylan, as well as various arabino-xylooligosaccharides from arabinoxylan. TcXyn30C has a modular structure consisting of a catalytic domain and a C-terminal cellulose-binding module 1 (CBM1). In this study, the crystal structure of a TcXyn30C mutant which lacks the CBM1 domain was determined at 1.65 Å resolution. The structure of the active site of TcXyn30C was compared with that of the bifunctional GH30-7 xylanase B from T. cellulolyticus (TcXyn30B), which exhibits glucuronoxylanase and xylobiohydrolase activities. The results revealed that TcXyn30C has a conserved structural feature for recognizing the 4-O-methyl-α-D-glucuronic acid (MeGlcA) substituent in subsite -2b. Additionally, the results demonstrated that Phe47 contributes significantly to catalysis by TcXyn30C. Phe47 is located in subsite -2b and also near the C-3 hydroxyl group of a xylose residue in subsite -2a. Substitution of Phe47 with an arginine residue caused a remarkable decrease in the catalytic efficiency towards arabinoxylan, suggesting the importance of Phe47 in arabinoxylan hydrolysis. These findings indicate that subsite -2b of TcXyn30C has unique structural features that interact with arabinofuranose and MeGlcA substituents.

Entities:  

Keywords:  Talaromyces cellulolyticus; crystal structure; endoxylanases; glucuronoxylanases; glycoside hydrolase family 30

Mesh:

Substances:

Year:  2020        PMID: 32744245      PMCID: PMC7397468          DOI: 10.1107/S2053230X20009024

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  26 in total

1.  Isolation of uracil auxotrophs of the fungus Acremonium cellulolyticus and the development of a transformation system with the pyrF gene.

Authors:  Tatsuya Fujii; Kazuya Iwata; Katsuji Murakami; Shinichi Yano; Shigeki Sawayama
Journal:  Biosci Biotechnol Biochem       Date:  2012-02-07       Impact factor: 2.043

2.  Construction of a starch-inducible homologous expression system to produce cellulolytic enzymes from Acremonium cellulolyticus.

Authors:  Hiroyuki Inoue; Tatsuya Fujii; Miho Yoshimi; Larry E Taylor; Stephen R Decker; Seiichiro Kishishita; Makoto Nakabayashi; Kazuhiko Ishikawa
Journal:  J Ind Microbiol Biotechnol       Date:  2013-05-23       Impact factor: 3.346

3.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

4.  Structural and functional characterization of a bifunctional GH30-7 xylanase B from the filamentous fungus Talaromyces cellulolyticus.

Authors:  Yusuke Nakamichi; Thierry Fouquet; Shotaro Ito; Masahiro Watanabe; Akinori Matsushika; Hiroyuki Inoue
Journal:  J Biol Chem       Date:  2019-01-17       Impact factor: 5.157

5.  Mode of action of glycoside hydrolase family 5 glucuronoxylan xylanohydrolase from Erwinia chrysanthemi.

Authors:  Mária Vrsanská; Katarína Kolenová; Vladimír Puchart; Peter Biely
Journal:  FEBS J       Date:  2007-04       Impact factor: 5.542

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

8.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

Review 9.  Endo-xylanases as tools for production of substituted xylooligosaccharides with prebiotic properties.

Authors:  Eva Nordberg Karlsson; Eva Schmitz; Javier A Linares-Pastén; Patrick Adlercreutz
Journal:  Appl Microbiol Biotechnol       Date:  2018-09-08       Impact factor: 4.813

10.  Substrate recognition by a bifunctional GH30-7 xylanase B from Talaromyces cellulolyticus.

Authors:  Yusuke Nakamichi; Masahiro Watanabe; Akinori Matsushika; Hiroyuki Inoue
Journal:  FEBS Open Bio       Date:  2020-05-22       Impact factor: 2.693

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