Literature DB >> 21811096

Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond.

Junjie U Guo1, Yijing Su, Chun Zhong, Guo-li Ming, Hongjun Song.   

Abstract

Cytosine methylation is the major epigenetic modification of metazoan DNA. Although there is strong evidence that active DNA demethylation occurs in animal cells, the molecular details of this process are unknown. The recent discovery of the TET protein family (TET1-3) 5-methylcytosine hydroxylases has provided a new entry point to reveal the identity of the long-sought DNA demethylase. Here, we review the recent progress in understanding the function of TET proteins and 5-hydroxymethylcytosine (5hmC) through various biochemical and genomic approaches, the current evidence for a role of 5hmC as an early intermediate in active DNA demethylation and the potential functions of TET proteins and 5hmC beyond active DNA demethylation. We also discuss how future studies can extend our knowledge of this novel epigenetic modification.

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Year:  2011        PMID: 21811096      PMCID: PMC3219536          DOI: 10.4161/cc.10.16.17093

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  76 in total

1.  Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells.

Authors:  Yufei Xu; Feizhen Wu; Li Tan; Lingchun Kong; Lijun Xiong; Jie Deng; Andrew J Barbera; Lijuan Zheng; Haikuo Zhang; Stephen Huang; Jinrong Min; Thomas Nicholson; Taiping Chen; Guoliang Xu; Yang Shi; Kun Zhang; Yujiang Geno Shi
Journal:  Mol Cell       Date:  2011-04-21       Impact factor: 17.970

2.  TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.

Authors:  Kristine Williams; Jesper Christensen; Marianne Terndrup Pedersen; Jens V Johansen; Paul A C Cloos; Juri Rappsilber; Kristian Helin
Journal:  Nature       Date:  2011-04-13       Impact factor: 49.962

3.  Epigenetic reprogramming of mouse germ cells toward totipotency.

Authors:  M A Surani; P Hajkova
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2010-12-07

4.  Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.

Authors:  William A Pastor; Utz J Pape; Yun Huang; Hope R Henderson; Ryan Lister; Myunggon Ko; Erin M McLoughlin; Yevgeny Brudno; Sahasransu Mahapatra; Philipp Kapranov; Mamta Tahiliani; George Q Daley; X Shirley Liu; Joseph R Ecker; Patrice M Milos; Suneet Agarwal; Anjana Rao
Journal:  Nature       Date:  2011-05-08       Impact factor: 49.962

5.  Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons.

Authors:  Jian Feng; Yu Zhou; Susan L Campbell; Thuc Le; En Li; J David Sweatt; Alcino J Silva; Guoping Fan
Journal:  Nat Neurosci       Date:  2010-03-14       Impact factor: 24.884

6.  Direct detection of DNA methylation during single-molecule, real-time sequencing.

Authors:  Benjamin A Flusberg; Dale R Webster; Jessica H Lee; Kevin J Travers; Eric C Olivares; Tyson A Clark; Jonas Korlach; Stephen W Turner
Journal:  Nat Methods       Date:  2010-05-09       Impact factor: 28.547

7.  Transcriptomic analysis of autistic brain reveals convergent molecular pathology.

Authors:  Irina Voineagu; Xinchen Wang; Patrick Johnston; Jennifer K Lowe; Yuan Tian; Steve Horvath; Jonathan Mill; Rita M Cantor; Benjamin J Blencowe; Daniel H Geschwind
Journal:  Nature       Date:  2011-05-25       Impact factor: 49.962

8.  Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes.

Authors:  Shannon Morey Kinney; Hang Gyeong Chin; Romualdas Vaisvila; Jurate Bitinaite; Yu Zheng; Pierre-Olivier Estève; Suhua Feng; Hume Stroud; Steven E Jacobsen; Sriharsa Pradhan
Journal:  J Biol Chem       Date:  2011-05-24       Impact factor: 5.157

9.  Genomic mapping of 5-hydroxymethylcytosine in the human brain.

Authors:  Seung-Gi Jin; Xiwei Wu; Arthur X Li; Gerd P Pfeifer
Journal:  Nucleic Acids Res       Date:  2011-03-04       Impact factor: 16.971

10.  5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells.

Authors:  Hume Stroud; Suhua Feng; Shannon Morey Kinney; Sriharsa Pradhan; Steven E Jacobsen
Journal:  Genome Biol       Date:  2011-06-20       Impact factor: 13.583

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  103 in total

Review 1.  The Emerging Role of Epigenetics in the Regulation of Female Puberty.

Authors:  Alejandro Lomniczi; Sergio R Ojeda
Journal:  Endocr Dev       Date:  2015-12-17

Review 2.  DNA methylation and childhood maltreatment: from animal models to human studies.

Authors:  P-E Lutz; G Turecki
Journal:  Neuroscience       Date:  2013-08-08       Impact factor: 3.590

Review 3.  Epigenetic mechanisms of neuroplasticity and the implications for stroke recovery.

Authors:  Ryan J Felling; Hongjun Song
Journal:  Exp Neurol       Date:  2014-09-26       Impact factor: 5.330

Review 4.  Epigenetic pathways through which experiences become linked with biology.

Authors:  Patrick O McGowan; Tania L Roth
Journal:  Dev Psychopathol       Date:  2015-05

5.  Global modulation in DNA epigenetics during pro-inflammatory macrophage activation.

Authors:  Nikhil Jain; Tamar Shahal; Tslil Gabrieli; Noa Gilat; Dmitry Torchinsky; Yael Michaeli; Viola Vogel; Yuval Ebenstein
Journal:  Epigenetics       Date:  2019-07-08       Impact factor: 4.528

6.  Genome-wide antagonism between 5-hydroxymethylcytosine and DNA methylation in the adult mouse brain.

Authors:  Junjie U Guo; Keith E Szulwach; Yijing Su; Yujing Li; Bing Yao; Zihui Xu; Joo Heon Shin; Bing Xie; Yuan Gao; Guo-Li Ming; Peng Jin; Hongjun Song
Journal:  Front Biol (Beijing)       Date:  2014-02

7.  An Intrinsic Epigenetic Barrier for Functional Axon Regeneration.

Authors:  Yi-Lan Weng; Ran An; Jessica Cassin; Jessica Joseph; Ruifa Mi; Chen Wang; Chun Zhong; Seung-Gi Jin; Gerd P Pfeifer; Alfonso Bellacosa; Xinzhong Dong; Ahmet Hoke; Zhigang He; Hongjun Song; Guo-Li Ming
Journal:  Neuron       Date:  2017-04-19       Impact factor: 17.173

Review 8.  Recent advances in the structural mechanisms of DNA glycosylases.

Authors:  Sonja C Brooks; Suraj Adhikary; Emily H Rubinson; Brandt F Eichman
Journal:  Biochim Biophys Acta       Date:  2012-10-14

Review 9.  Modulation of mutagenesis in eukaryotes by DNA replication fork dynamics and quality of nucleotide pools.

Authors:  Irina S-R Waisertreiger; Victoria G Liston; Miriam R Menezes; Hyun-Min Kim; Kirill S Lobachev; Elena I Stepchenkova; Tahir H Tahirov; Igor B Rogozin; Youri I Pavlov
Journal:  Environ Mol Mutagen       Date:  2012-10-10       Impact factor: 3.216

10.  Maternal immune activation induces GAD1 and GAD2 promoter remodeling in the offspring prefrontal cortex.

Authors:  Marie Anaïs Labouesse; Erbo Dong; Dennis Robert Grayson; Alessandro Guidotti; Urs Meyer
Journal:  Epigenetics       Date:  2015       Impact factor: 4.528

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