Literature DB >> 20890464

Probing active site geometry using high pressure and secondary isotope effects in an enzyme-catalysed 'deep' H-tunnelling reaction.

Sam Hay1, Christopher R Pudney, Michael J Sutcliffe, Nigel S Scrutton.   

Abstract

We report the first study of the effects of hydrostatic pressure on α-2° KIEs for an enzyme-catalysed H-transfer reaction that occurs by 'deep' tunnelling. High pressure causes a significant decrease in the observed α-2° KIE on the pre-steady-state hydride transfer from NADH to FMN in the flavoprotein morphinone reductase. We have recently shown that high pressure causes a reduction in macroscopic reaction barrier width for this reaction. Using DFT vibrational analysis of a simple active site model, we posit that the decrease in α-2° KIE with pressure may arise due to a decrease in the vibrational coupling between the NADH primary (transferred) and secondary hydrogens in the 'tunnelling ready configuration', which more closely resembles the reactant state than the transition state.

Entities:  

Year:  2010        PMID: 20890464      PMCID: PMC2948560          DOI: 10.1002/poc.1653

Source DB:  PubMed          Journal:  J Phys Org Chem        ISSN: 0894-3230            Impact factor:   2.391


  32 in total

Review 1.  Environmentally coupled hydrogen tunneling. Linking catalysis to dynamics.

Authors:  Michael J Knapp; Judith P Klinman
Journal:  Eur J Biochem       Date:  2002-07

Review 2.  Computational and theoretical methods to explore the relation between enzyme dynamics and catalysis.

Authors:  Dimitri Antoniou; Jodi Basner; Sara Núñez; Steven D Schwartz
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

Review 3.  Tunneling and dynamics in enzymatic hydride transfer.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

Review 4.  Atomistic insight into the origin of the temperature-dependence of kinetic isotope effects and H-tunnelling in enzyme systems is revealed through combined experimental studies and biomolecular simulation.

Authors:  Sam Hay; Christopher Pudney; Parvinder Hothi; Linus O Johannissen; Laura Masgrau; Jiayun Pang; David Leys; Michael J Sutcliffe; Nigel S Scrutton
Journal:  Biochem Soc Trans       Date:  2008-02       Impact factor: 5.407

Review 5.  A perspective on enzyme catalysis.

Authors:  Stephen J Benkovic; Sharon Hammes-Schiffer
Journal:  Science       Date:  2003-08-29       Impact factor: 47.728

6.  Hybrid density functional theory for pi-stacking interactions: application to benzenes, pyridines, and DNA bases.

Authors:  Mark P Waller; Arturo Robertazzi; James A Platts; David E Hibbs; Peter A Williams
Journal:  J Comput Chem       Date:  2006-03       Impact factor: 3.376

7.  Solvent as a probe of active site motion and chemistry during the hydrogen tunnelling reaction in morphinone reductase.

Authors:  Sam Hay; Christopher R Pudney; Michael J Sutcliffe; Nigel S Scrutton
Journal:  Chemphyschem       Date:  2008-09-15       Impact factor: 3.102

8.  Deep tunneling dominates the biologically important hydride transfer reaction from NADH to FMN in morphinone reductase.

Authors:  Jiayun Pang; Sam Hay; Nigel S Scrutton; Michael J Sutcliffe
Journal:  J Am Chem Soc       Date:  2008-05-10       Impact factor: 15.419

9.  Correction of pre-steady-state KIEs for isotopic impurities and the consequences of kinetic isotope fractionation.

Authors:  Sam Hay; Christopher R Pudney; Parvinder Hothi; Nigel S Scrutton
Journal:  J Phys Chem A       Date:  2008-12-18       Impact factor: 2.781

10.  Alpha-secondary isotope effects as probes of "tunneling-ready" configurations in enzymatic H-tunneling: insight from environmentally coupled tunneling models.

Authors:  Christopher R Pudney; Sam Hay; Michael J Sutcliffe; Nigel S Scrutton
Journal:  J Am Chem Soc       Date:  2006-11-01       Impact factor: 15.419

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  4 in total

1.  Good vibrations in enzyme-catalysed reactions.

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

Review 2.  Kinetic isotope effects as a probe of hydrogen transfers to and from common enzymatic cofactors.

Authors:  Daniel Roston; Zahidul Islam; Amnon Kohen
Journal:  Arch Biochem Biophys       Date:  2013-10-22       Impact factor: 4.013

3.  Excited state dynamics can be used to probe donor-acceptor distances for H-tunneling reactions catalyzed by flavoproteins.

Authors:  Samantha J O Hardman; Christopher R Pudney; Sam Hay; Nigel S Scrutton
Journal:  Biophys J       Date:  2013-12-03       Impact factor: 4.033

Review 4.  Does the pressure dependence of kinetic isotope effects report usefully on dynamics in enzyme H-transfer reactions?

Authors:  Robin Hoeven; Derren J Heyes; Sam Hay; Nigel S Scrutton
Journal:  FEBS J       Date:  2015-01-29       Impact factor: 5.542

  4 in total

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